Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SUC3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02860 849 / 0 ATSUT2, ATSUC3, SUT2 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2) AT1G71880 408 / 8e-137 ATSUC1, SUC1 ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 1, sucrose-proton symporter 1 (.1) AT5G06170 402 / 1e-134 ATSUC9 sucrose-proton symporter 9 (.1) AT1G09960 402 / 2e-134 ATSUC4, SUC4, ATSUT4, SUT4 sucrose transporter 4 (.1) AT1G66570 395 / 4e-132 ATSUC7 sucrose-proton symporter 7 (.1.2.3) AT2G14670 390 / 7e-130 ATSUC8 sucrose-proton symporter 8 (.1) AT5G43610 387 / 5e-129 ATSUC6 sucrose-proton symporter 6 (.1) AT1G71890 239 / 2e-71 SUC5, ATSUC5 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) AT1G22710 231 / 2e-68 SUT1, ATSUC2, SUC2 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G093600 [exp] 1058 / 0 AT2G02860 816 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2) Potri.002G106900 [exp] 432 / 2e-146 AT1G09960 674 / 0.0 sucrose transporter 4 (.1) Potri.013G115200 [exp] 411 / 1e-137 AT1G22710 643 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Potri.019G085800 [exp] 228 / 4e-67 AT1G22710 645 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030492 [exp] 901 / 0 AT2G02860 863 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2) Lus10012844 [exp] 727 / 0 AT2G02860 696 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2) Lus10032815 [exp] 432 / 4e-146 AT1G09960 694 / 0.0 sucrose transporter 4 (.1) Lus10029766 [exp] 405 / 4e-135 AT1G22710 655 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10017910 [exp] 397 / 3e-132 AT1G71890 693 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10028616 [exp] 392 / 3e-130 AT1G71890 617 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10018915 [exp] 390 / 2e-129 AT1G71890 616 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10007702 [exp] 389 / 2e-129 AT1G22710 588 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10028614 [exp] 388 / 8e-129 AT1G71890 603 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10018914 [exp] 385 / 2e-127 AT1G71890 593 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF13347 [poplar] [flax] MFS_2 MFS/sugar transport protein
Representative CDS sequence Show only first row Show all	>Potri.008G148100.2 pacid=42806377 polypeptide=Potri.008G148100.2.p locus=Potri.008G148100 ID=Potri.008G148100.2.v4.1 annot-version=v4.1 ATGGAGTCGGCGCCGATTCGGGTACCGTACCGGAATCTCAAGAAGGAGATAGAGGTAGAAATGGTGGGTCTGGAAATGGAGTCTCCTCCTTCTCCTCATC GGATCCAGTCTCCTCACACTCATAATTCCGATGCAGATTTGAGATCTCAATCCACTAGACATCATATTAGCTTAATCACTCTTGTTCTCAGCTGCACCGT CGCCGCTGGTGTTCAATTCGGTTGGGCCTTGCAGCTCTCTCTCCTCACTCCCTATATACAGACTCTTGGAATTGGACATGCCTTTTCGTCCTTCATTTGG CTCTGCGGTCCTATTACAGGCCTTGTGGTTCAACCTTGCGTTGGTATTTGGAGTGATAAATGCTCTTCAAAATTTGGAAGAAGACGGCCATTTATTCTTG CAGGATCACTCATGATCTCTGTTGCTGTGATAATAATTGGATTTTCTGCAGACATTGGATATGTATTAGGGGATACAGAGGAGCATTGCAGTAAATTCAA GGGCACTCGAACGTGGGCAGCATTTGTCTTTGTTATTGGCTTCTGGATGCTGGATCTTGCTAATAATACGGTGCAGGGACCAGCCCGTGCCCTTCTTGCT GATTTATCAGGTCCTGATCAACACAATTTATCAAATGCTGTATTTTGCTCATGGATGGCTGTTGGAAACATTTTAGGATTTTCAGCTGGTGCTAGTGGGA GTTGGAACAGATGGTTTCCTTTCTTGATGAATAGAGCTTGTTGTGAAGCTTGCGGAAATCTTAAAGCAGCATTTCTTGTAGCAGTGGTCTTCCTCACTTT TTGTACTCTTGTGACTCTATATTTTGCGGATGAGGTTCCACTAAATGTTAATCAACCACGCCATTTATCAGATTCTGCTCCATTGTTGAATGGTTCACAA CAAAACGGCCATGAACTTTCAACATCTGAGTCTCACTTGCCGGGTCTTGACAATTTGAGTGGGAATGGCAACAATCATGACCATGAACTGAGAATGAATT CGAAGCATGCCAACTCTGTAGGGGATCAAAATGAAAATTTCAGCGATGGCCCAGGAGCTGTGTTAGTCAATTTATTAACTAGTTTAAGGCATTTACCTCC TGGAATGCATTCAGTGCTTGTCGTTATGGCTCTAACTTGGTTGTCCTGGTTCCCATTCTTTCTATTTGATACAGATTGGATGGGAAGAGAAGTTTATCAC GGAGATCCAAAAGGGAATTCGAATGAAGTGGAGTTGTATGATCAAGGAGTCAGAGAAGGTGCATTTGGTTTGCTGTTGAATTCTGTTGTTCTTGGCATTA GCTCGTTCTTGATTGAGCCAATGTGTCGGAGGTTGGGGTCAAGATTTGTGTGGGCAATGAGCAATTTTATAGTATTTGTCTGCATGGCAGGCACTGCTGT TATTAGTTTGATATCAGTTGGTGAATATTCTGAAGGAATCGAACATGTAATTGGAGGGAATGCGCCAATCAGGATAGCTGCCTTGATTGTATTTGCTCTT CTTGGCTTTCCTCTTGCTATTACCTATAGTGTTCCATTTTCTGTCACGGCAGAGTTGACTGCTGATTCAGGCGGTGGCCAAGGATTGGCCATAGGAGTTC TCAATCTTGCAATAGTTATTCCACAGATGATTATATCCATTGGTGCCGGTCCATGGGATGCGCTTTTTGGGGGAGGAAATATACCAGCCTTCGTTCTGGC TTCTGTATCTGCTCTTGCAGCTGGTGTTATTGCAACTCTAAAGCTGCCGAATCTTTCAAGCAGGTCCTTCCAGTCTGGTTTTCATTTTGGCTAG
AA sequence Show only first row Show all	>Potri.008G148100.2 pacid=42806377 polypeptide=Potri.008G148100.2.p locus=Potri.008G148100 ID=Potri.008G148100.2.v4.1 annot-version=v4.1 MESAPIRVPYRNLKKEIEVEMVGLEMESPPSPHRIQSPHTHNSDADLRSQSTRHHISLITLVLSCTVAAGVQFGWALQLSLLTPYIQTLGIGHAFSSFIW LCGPITGLVVQPCVGIWSDKCSSKFGRRRPFILAGSLMISVAVIIIGFSADIGYVLGDTEEHCSKFKGTRTWAAFVFVIGFWMLDLANNTVQGPARALLA DLSGPDQHNLSNAVFCSWMAVGNILGFSAGASGSWNRWFPFLMNRACCEACGNLKAAFLVAVVFLTFCTLVTLYFADEVPLNVNQPRHLSDSAPLLNGSQ QNGHELSTSESHLPGLDNLSGNGNNHDHELRMNSKHANSVGDQNENFSDGPGAVLVNLLTSLRHLPPGMHSVLVVMALTWLSWFPFFLFDTDWMGREVYH GDPKGNSNEVELYDQGVREGAFGLLLNSVVLGISSFLIEPMCRRLGSRFVWAMSNFIVFVCMAGTAVISLISVGEYSEGIEHVIGGNAPIRIAALIVFAL LGFPLAITYSVPFSVTAELTADSGGGQGLAIGVLNLAIVIPQMIISIGAGPWDALFGGGNIPAFVLASVSALAAGVIATLKLPNLSSRSFQSGFHFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G02860		ATSUT2, ATSUC3,...	ARABIDOPSIS THALIANA SUCROSE T...		Potri.008G148100 [exp]	0	1	Pt-SUC3.2
AT1G31300			TRAM, LAG1 and CLN8 (TLC) lipi...		Potri.015G113200 [exp]	11.04	0.8520
AT2G01690			ARM repeat superfamily protein...		Potri.008G134600 [exp]	13.74	0.8065
AT3G11130			Clathrin, heavy chain (.1)		Potri.001G278800 [exp]	14.89	0.8313
AT3G07340	bHLH	bHLH062	basic helix-loop-helix (bHLH) ...		Potri.002G235400 [exp]	15.49	0.7864
AT1G10130		ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE C...		Potri.014G014700 [exp]	16.24	0.8105	Pt-ECA3.3
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Potri.006G216900 [exp]	17.46	0.8329
AT4G24840			unknown protein		Potri.012G096100 [exp]	19.23	0.8435
AT5G08560			transducin family protein / WD...		Potri.002G055800 [exp]	20.19	0.7908
AT3G50590			Transducin/WD40 repeat-like su...		Potri.007G041000 [exp]	21.54	0.8347
AT4G02030			Vps51/Vps67 family (components...		Potri.002G196300 [exp]	23.04	0.8429

Compare expression of checked genes

Potri.008G148100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.