Plant FIBer expression Database

Potri.008G148266 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.008G148266.1 pacid=42806502 polypeptide=Potri.008G148266.1.p locus=Potri.008G148266 ID=Potri.008G148266.1.v4.1 annot-version=v4.1
ATGAAGATGTTAGCTGGCCTAAGATTAGCACCTCCGTGGCTATCACCTCCGTGGGCCGTGGCTATCACCTCCGTCCCTCCTCCAGCCAACAGAAACACAC
ACACACAAAACACTTTCTTCAACCACCACCCGCCCTTTTCACTTTTATTTATTTTTTTTCCGGATAATGCAGTCAGTAATCTACTCCACTCCTCTCACCC
TCAACTACCTCCTCCCTGGCCCACAAATTTCTCCAACTTCCCTCCAAGGTCACAGACTAATAACCATGTCACGTGTCCTCCGCCCCCAGCAAACCAATCA
CCACCACCTCCTCGGAAAAACCCACTGAAGAAACCATCTTTTTTCACGGTGGAGCCCACTACGGTGACCTCATAG
AA sequence
>Potri.008G148266.1 pacid=42806502 polypeptide=Potri.008G148266.1.p locus=Potri.008G148266 ID=Potri.008G148266.1.v4.1 annot-version=v4.1
MKMLAGLRLAPPWLSPPWAVAITSVPPPANRNTHTQNTFFNHHPPFSLLFIFFPDNAVSNLLHSSHPQLPPPWPTNFSNFPPRSQTNNHVTCPPPPANQS
PPPPRKNPLKKPSFFTVEPTTVTS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.008G148266
[exp]
0 1
AT4G37760 SQE3 squalene epoxidase 3 (.1) Potri.007G007600
[exp]
1.00 0.8448
AT1G23710 Protein of unknown function (D... Potri.018G096600
[exp]
3.46 0.8158
AT5G14210 Leucine-rich repeat protein ki... Potri.015G093100
[exp]
4.24 0.8375
AT3G21510 ATHP3, AHP1 histidine-containing phosphotr... Potri.010G027100
[exp]
5.09 0.8031 AHP1.1
AT1G51405 myosin-related (.1) Potri.009G052400
[exp]
7.74 0.8436
AT2G32230 PRORP1 proteinaceous RNase P 1 (.1) Potri.004G074100
[exp]
13.60 0.7636
AT5G50330 Protein kinase superfamily pro... Potri.015G091000
[exp]
23.62 0.7727
AT4G03110 AtRBP-DR1 RNA-binding protein-defense re... Potri.002G214000
[exp]
24.65 0.7618
AT3G57030 Calcium-dependent phosphotries... Potri.008G109966
[exp]
25.23 0.8083
Potri.001G374750
[exp]
28.84 0.7786

Potri.008G148266 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.