Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CUL3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26830 1342 / 0 CUL3A, ATCUL3A, ATCUL3 cullin 3A, cullin 3 (.1) AT1G69670 1328 / 0 CUL3B, ATCUL3B ARABIDOPSIS THALIANA CULLIN 3B, cullin 3B (.1) AT5G46210 518 / 5e-174 CUL4, ATCUL4 cullin4 (.1) AT4G02570 429 / 5e-140 AXR6, ATCUL1 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) AT1G02980 396 / 3e-127 ATCUL2, CUL2 cullin 2 (.1) AT1G43140 367 / 2e-116 Cullin family protein (.1) AT1G59790 133 / 8e-34 Cullin family protein (.1) AT1G59800 108 / 3e-26 Cullin family protein (.1) AT4G12100 82 / 4e-16 Cullin family protein (.1) AT3G46910 72 / 1e-13 Cullin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G093200 [exp] 1479 / 0 AT1G26830 1345 / 0.0 cullin 3A, cullin 3 (.1) Potri.011G084400 [exp] 526 / 8e-177 AT5G46210 1250 / 0.0 cullin4 (.1) Potri.004G132900 [exp] 513 / 9e-172 AT5G46210 1211 / 0.0 cullin4 (.1) Potri.008G217300 [exp] 430 / 2e-140 AT4G02570 1272 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.010G023800 [exp] 429 / 4e-140 AT4G02570 1265 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.003G115500 [exp] 422 / 1e-137 AT4G02570 1209 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.001G117200 [exp] 419 / 2e-136 AT4G02570 1226 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.008G224075 [exp] 69 / 9e-14 AT4G02570 218 / 4e-68 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.013G020000 [exp] 68 / 4e-12 AT4G02570 172 / 2e-48 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036739 [exp] 1416 / 0 AT1G26830 1335 / 0.0 cullin 3A, cullin 3 (.1) Lus10037188 [exp] 1415 / 0 AT1G26830 1328 / 0.0 cullin 3A, cullin 3 (.1) Lus10012835 [exp] 1407 / 0 AT1G26830 1320 / 0.0 cullin 3A, cullin 3 (.1) Lus10030485 [exp] 1404 / 0 AT1G26830 1317 / 0.0 cullin 3A, cullin 3 (.1) Lus10023306 [exp] 449 / 4e-149 AT5G46210 1077 / 0.0 cullin4 (.1) Lus10032200 [exp] 421 / 8e-137 AT4G02570 1269 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10024562 [exp] 419 / 2e-136 AT4G02570 1271 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10028917 [exp] 407 / 2e-131 AT4G02570 1290 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10004334 [exp] 402 / 8e-130 AT4G02570 1279 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10038504 [exp] 393 / 2e-128 AT5G46210 913 / 0.0 cullin4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00888 [poplar] [flax] Cullin Cullin family CL0123 [poplar] [flax] HTH PF10557 [poplar] [flax] Cullin_Nedd8 Cullin protein neddylation domain
Representative CDS sequence Show only first row Show all	>Potri.008G148300.1 pacid=42807221 polypeptide=Potri.008G148300.1.p locus=Potri.008G148300 ID=Potri.008G148300.1.v4.1 annot-version=v4.1 ATGAGCAATCAGAAGAAGAGGAATTTCCAGATAGATGCGTTTAAGCACCGGGTGGTGGTGGATCCGAAATACGCCGATAAGACTTGGAAGATCCTGGAGC ACGCAATCCATGAAATCTACAATCATAATGCTAGTGGTCTCAGTTTTGAAGAGCTCTACAGGAACGCCTACAATATGGTGCTACACAAATTTGGTGAGAA GTTGTATAATGGTCTGGTTGCGACTATGACTTCACATCTAAAAGAAATATCAAAATCTATCGAGGCTGCTCAGGGAGATTCATTTTTGGAGGAGCTGAAC AGGAAATGGAATGATCATAACAAAGCATTGCAAATGATCAGAGACATATTGATGTATATGGACAGGACATATATCCCAAGTGTGCATAAAACCCCTGTTC ATGAACTTGGGCTTAACTTGTGGAGGGATAATATAATACACTCGAGCAAAATTCAGACACGGCTTCAAAACACACTTCTTGAACTAGTTCATAGGGAACG GACTGGCGAAGTTATTGACCGAGGGTTGATGAGGAACATTGTCAAGATGCTAATGGATTTAGGTTCTTCTGTTTACCAAGAAGACTTTGAGAAGCCATTT CTTGAGGTTTCTGCTGAGTTTTACAGTGGCGAATCTCAGAAGTTCATTGAGTGCTGTGATTGTGGTGATTATCTAAAGAAAGCTGAGAAACGTTTAAATG AAGAGATAGAGAGAGTGACCCATTATTTGGATTCCAAGAGTGAAGTCAGGATAAATAATGTGGTGGAGAAGGAGATGATTGCTAATCACATGCTGAGATT AGTCCACATGGAGAATTCAGGCTTGGTAAATATGCTTCTTGATGATAAATTTGATGACTTGGGACGGATGTACAACCTGTTCCGCCGGGTTCCTGATGGT CTTTCAACAATAAGAGAAGTGATGACTTCTCACCTTAGGGAGACTGGCAAGCAACTTGTTACTGATCCAGAAAGGTTGAAGGATCCAGTGGAGTTTGTTC AGTGTTTGTTGGATGAAAAAGATAAGTACGATAGCATCATAAGCAATGCATTTAACAATGACAAGACATTCCAGAATGCTCTGAACTCCTCTTTTGAATA TTTCATTAACTTGAATACTCGTTCTCCCGAGTTCATTTCACTGTTTGTGGATGACAAACTTCGCAAAGGTCTAAAAGGAGTTAGTGAGGAGGATGTGGAG ATCATTCTTGACAAGGTGATGATGCTGTTCCGCTATTTGCAGGAGAAAGATGTGTTTGAAAAGTATTACAAGCAGCATTTGGCTAAGCGGCTGCTGTCAG GGAAAACAGTCTCTGATGATGCAGAGAGAAGTCTGATAGTCAAACTTAAGACAGAATGTGGTTACCAGTTCACTTCAAAATTAGAAGGCATGTTTACAGA CATGAAAACCTCCCAGGATACAATGCAAGGTTTTTATGCAAGCCACCCGGAGCTGGGGGATGGACCAACACTGGTTGTCCAGGTTTTGACAACAGGGTCT TGGCCCACTCAACCTGGTGTTCCATGCAACTTGCCTGCAGAAATGTCAGCACTATGTGAGAAGTTCAGGTCATATTACCTTGGGACCCATACTGGTCGGA GATTGTCATGGCAAACTAACATGGGCACAGCGGACATTAAGGCAACCTTCGGGAAGGGTCAGAAGCATGAATTGAATGTCTCCACTTACCAGATGTGCGT TCTCATGCTGTTTAATAATGCTGATAGACTTGGCTACAAAGAGATTGAGCAGGCAACTGAGATTCCTACAGCAGACTTGAAAAGGTGCCTGCAATCCATG GCTTGTGTGAAGGGAAAGAATGTTCTTCGCAAAGAACCCATGAGTAAAGACATTGGTGAGGAAGATGCTTTTTTTGTTAATGACAAATTCACAAGCAAAT TCTATAAGGTGAAGATTGGAACTGTAGTTGCGCAAAAGGAATCAGAACCTGAAAAGCAGGAGACTCGGCAGAGAGTAGAGGAGGACCGAAAGCCTCAGAT AGAAGCTGCAGTAGTTAGGATTATGAAGTCAAGGAGGGTATTGGATCACAACAATATAATCACTGAGGTCACAAAGCAGTTGCAGTCACGTTTCCTAGCG AACCCCACAGAAATTAAGAAACGGATTGAATCCCTTATTGAACGGGATTTCTTGGAGAGGGATAGTGTGGACAGAAAACTGTATCGATATCTTGCTTAA
AA sequence Show only first row Show all	>Potri.008G148300.1 pacid=42807221 polypeptide=Potri.008G148300.1.p locus=Potri.008G148300 ID=Potri.008G148300.1.v4.1 annot-version=v4.1 MSNQKKRNFQIDAFKHRVVVDPKYADKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYNGLVATMTSHLKEISKSIEAAQGDSFLEELN RKWNDHNKALQMIRDILMYMDRTYIPSVHKTPVHELGLNLWRDNIIHSSKIQTRLQNTLLELVHRERTGEVIDRGLMRNIVKMLMDLGSSVYQEDFEKPF LEVSAEFYSGESQKFIECCDCGDYLKKAEKRLNEEIERVTHYLDSKSEVRINNVVEKEMIANHMLRLVHMENSGLVNMLLDDKFDDLGRMYNLFRRVPDG LSTIREVMTSHLRETGKQLVTDPERLKDPVEFVQCLLDEKDKYDSIISNAFNNDKTFQNALNSSFEYFINLNTRSPEFISLFVDDKLRKGLKGVSEEDVE IILDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMQGFYASHPELGDGPTLVVQVLTTGS WPTQPGVPCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGTADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLGYKEIEQATEIPTADLKRCLQSM ACVKGKNVLRKEPMSKDIGEEDAFFVNDKFTSKFYKVKIGTVVAQKESEPEKQETRQRVEEDRKPQIEAAVVRIMKSRRVLDHNNIITEVTKQLQSRFLA NPTEIKKRIESLIERDFLERDSVDRKLYRYLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Potri.008G148300 [exp]	0	1	CUL3.1
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Potri.010G093200 [exp]	1.00	0.7669	CUL3.2
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Potri.011G067600 [exp]	2.00	0.7412
AT4G01840		KCO5, ATTPK5, A...	Ca2+ activated outward rectify...		Potri.014G113700 [exp]	6.24	0.7094
AT2G28200	C2H2ZnF		C2H2-type zinc finger family p...		Potri.004G216900 [exp]	14.07	0.6025
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Potri.007G093600 [exp]	17.17	0.6400	Pt-UBP3.1
AT1G16210			unknown protein		Potri.009G140200 [exp]	20.56	0.6180
AT1G07990			SIT4 phosphatase-associated fa...		Potri.004G211500 [exp]	21.79	0.5773
AT5G42150			Glutathione S-transferase fami...		Potri.012G046600 [exp]	23.32	0.6549
AT5G58900	MYB		Homeodomain-like transcription...		Potri.009G042600 [exp]	25.69	0.5720
AT2G01710			Chaperone DnaJ-domain superfam...		Potri.002G105500 [exp]	25.92	0.5932

Compare expression of checked genes

Potri.008G148300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.