Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15110 523 / 0 Pectate lyase family protein (.1) AT3G01270 522 / 0 Pectate lyase family protein (.1) AT1G14420 516 / 0 AT59 Pectate lyase family protein (.1) AT2G02720 505 / 4e-178 Pectate lyase family protein (.1) AT4G13710 460 / 3e-160 Pectin lyase-like superfamily protein (.1.2) AT1G67750 439 / 2e-152 Pectate lyase family protein (.1) AT3G07010 434 / 2e-150 Pectin lyase-like superfamily protein (.1) AT3G24670 433 / 8e-150 Pectin lyase-like superfamily protein (.1) AT5G63180 432 / 2e-149 Pectin lyase-like superfamily protein (.1) AT3G24230 430 / 1e-148 Pectate lyase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G064700 [exp] 604 / 0 AT5G15110 511 / 5e-180 Pectate lyase family protein (.1) Potri.004G124100 [exp] 531 / 0 AT5G15110 533 / 0.0 Pectate lyase family protein (.1) Potri.017G078400 [exp] 530 / 0 AT5G15110 481 / 7e-168 Pectate lyase family protein (.1) Potri.012G091500 [exp] 448 / 3e-156 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.015G087800 [exp] 448 / 5e-156 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G052300 [exp] 439 / 4e-152 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.003G175900 [exp] 438 / 1e-151 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G339500 [exp] 429 / 8e-149 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.010G051800 [exp] 430 / 1e-148 AT1G67750 645 / 0.0 Pectate lyase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036721 [exp] 606 / 0 AT3G01270 565 / 0.0 Pectate lyase family protein (.1) Lus10037207 [exp] 605 / 0 AT3G01270 561 / 0.0 Pectate lyase family protein (.1) Lus10030791 [exp] 569 / 0 AT5G15110 533 / 0.0 Pectate lyase family protein (.1) Lus10023623 [exp] 531 / 0 AT3G01270 517 / 0.0 Pectate lyase family protein (.1) Lus10005254 [exp] 517 / 0 AT3G01270 558 / 0.0 Pectate lyase family protein (.1) Lus10030670 [exp] 488 / 3e-171 AT3G01270 558 / 0.0 Pectate lyase family protein (.1) Lus10033018 [exp] 482 / 3e-168 AT5G15110 561 / 0.0 Pectate lyase family protein (.1) Lus10011400 [exp] 444 / 1e-154 AT1G67750 623 / 0.0 Pectate lyase family protein (.1) Lus10038157 [exp] 444 / 4e-154 AT4G13710 685 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10006456 [exp] 441 / 2e-153 AT1G67750 625 / 0.0 Pectate lyase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF00544 [poplar] [flax] Pectate_lyase_4 Pectate lyase CL0268 [poplar] [flax] PF04431 [poplar] [flax] Pec_lyase_N Pectate lyase, N terminus
Representative CDS sequence Show only first row Show all	>Potri.008G148800.1 pacid=42806411 polypeptide=Potri.008G148800.1.p locus=Potri.008G148800 ID=Potri.008G148800.1.v4.1 annot-version=v4.1 ATGCGAACTCTCAATGGCCATTTCCTTTTTTTCTCCCTTTTTGTGTCACTTGCGGCATTCGTTCCAACTCTGCAAGGCCATATTGGTGAATTCGATGAAT ACTGGAAGAAGAAAGCCGATGAAGCCCTTAAAGCCGCCCAGGAGGCTTTCTACCCGGATCCCATGAACGTCACCAACCAGTTTAACTTCCAGGTTAACAA GGTCATGACGGAGACCAACAGCACTAGAAGGAGCCTAGTAAGCAAAAGAGGCGGAAGATGCATGGCCACAAACCCAATTGATCGATGCTGGCGGTGTGAC CCGAATTGGGCAAGTCATCGACAAAAGCTAGCTGATTGCGTCCTTGGCTTTGGCCACAAAACTGTCGGGGGAAAGTATGGAAAGATTTACGTTGTGACAG ATGCCTCAGACAATGACATGCTTAACCCCAAACCTGGAACCCTACGCCATGCTGTGATTCAAAAAGAACCCCTTTGGATAATCTTTTCAGGTAGTATGGT AATCAGACTCAACCAGGAGCTGATGGTAGCTAGTAACAAAACCATTGATTCCAGGGGAGCCAAAGTGCATATTGCTTATGGTGCTGGTATTACTCTCCAA TTTGTACAAAATGTGATCATTCATGGCCTTCGCATTCATGACATCGTTATCGGAAGTGGTGGACTCGTCAGGGATTCTGTAGACCACTATGGATTCAGAA CTAAAAGCGACGGAGATGGGATTTCTATCTTTGGATCCTCTAACATTTGGATCGATCACGTTTCCATGTCCAACTGCCAAGACGGGCTTATCGATGTCAT CATGGGATCAAATGCCATCACCATTTCGAACAGCCATTTCACTCGCCACAATGAGGTGATGTTGTTCGGTGCAAGTGATAGCTACTCGGGTGATTCTATA ATGCAAATTACAGTTGCATTCAACCACTTTGGTAGGGGATTGGTTCAGAGGATGCCTAGGTGCAGATGGGGTTTCTTCCACGTGGTCAACAATGACTACA CCCACTGGATGATGTATGCCATTGGTGGAAGCCACAACCCTACCATCGTCAGTCAGGGCAATCGATTTATTGCTCCTAATAACACTTTTGCTAAGGAGGT GACCAAGAGGGATTACGCAGTGGAGAGCGAGTGGAAGAATTGGAATTGGAGATCTGACAATGATCTCATGATGAACGGAGCATTCTTTGTTCAATCCGGG AGTCCTATCACTTCAAGCAGGCGGATCTCAAGGTTTCACGTGATGAAATCGAAACCAGGAACATTTGTGACCAGGCTAACTCGATTTTCTGGTTCACTTG GCTGCTTTAAGGGAAAGCCTTGTTAG
AA sequence Show only first row Show all	>Potri.008G148800.1 pacid=42806411 polypeptide=Potri.008G148800.1.p locus=Potri.008G148800 ID=Potri.008G148800.1.v4.1 annot-version=v4.1 MRTLNGHFLFFSLFVSLAAFVPTLQGHIGEFDEYWKKKADEALKAAQEAFYPDPMNVTNQFNFQVNKVMTETNSTRRSLVSKRGGRCMATNPIDRCWRCD PNWASHRQKLADCVLGFGHKTVGGKYGKIYVVTDASDNDMLNPKPGTLRHAVIQKEPLWIIFSGSMVIRLNQELMVASNKTIDSRGAKVHIAYGAGITLQ FVQNVIIHGLRIHDIVIGSGGLVRDSVDHYGFRTKSDGDGISIFGSSNIWIDHVSMSNCQDGLIDVIMGSNAITISNSHFTRHNEVMLFGASDSYSGDSI MQITVAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWMMYAIGGSHNPTIVSQGNRFIAPNNTFAKEVTKRDYAVESEWKNWNWRSDNDLMMNGAFFVQSG SPITSSRRISRFHVMKSKPGTFVTRLTRFSGSLGCFKGKPC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15110			Pectate lyase family protein (...		Potri.008G148800 [exp]	0	1
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Potri.007G099000 [exp]	2.23	0.7543
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Potri.007G061540 [exp]	4.79	0.7923
AT1G50200		ACD, ALATS	Alanyl-tRNA synthetase (.1.2)		Potri.007G070250 [exp]	5.47	0.7331
AT4G18770	MYB	ATMYB98	myb domain protein 98 (.1)		Potri.015G077700 [exp]	8.00	0.6468
AT3G28050			nodulin MtN21 /EamA-like trans...		Potri.001G032100 [exp]	13.07	0.6873
					Potri.006G070200 [exp]	13.41	0.6213
AT2G31480			unknown protein		Potri.007G127200 [exp]	19.79	0.6525
					Potri.017G082950 [exp]	27.45	0.5994
AT3G15910			unknown protein		Potri.011G000700 [exp]	30.16	0.5918
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Potri.008G125300 [exp]	30.24	0.5956	CYP96.3

Compare expression of checked genes

Potri.008G148800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.