Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54870 378 / 4e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G05260 361 / 5e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G24360 103 / 2e-25 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G63380 102 / 2e-25 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G26770 102 / 2e-25 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G51680 102 / 4e-25 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G05530 99 / 2e-24 SDRA, IBR1 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) AT4G13180 97 / 1e-23 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G06060 97 / 2e-23 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 96 / 4e-23 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G023900 [exp] 399 / 5e-141 AT1G54870 493 / 1e-177 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G092400 [exp] 310 / 2e-107 AT1G54870 301 / 3e-103 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G050700 [exp] 227 / 1e-74 AT1G54870 182 / 5e-57 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.019G023900 [exp] 196 / 6e-62 AT1G54870 172 / 1e-52 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 121 / 1e-32 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G178700 [exp] 113 / 4e-29 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073900 [exp] 112 / 5e-29 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073800 [exp] 111 / 9e-29 AT1G52340 250 / 6e-83 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G056100 [exp] 112 / 1e-28 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029937 [exp] 397 / 6e-140 AT1G54870 503 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004471 [exp] 394 / 3e-138 AT1G54870 501 / 5e-180 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021931 [exp] 385 / 1e-135 AT3G05260 364 / 3e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10033745 [exp] 368 / 1e-128 AT1G54870 365 / 8e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10036980 [exp] 112 / 1e-28 AT1G24360 437 / 3e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10017129 [exp] 108 / 1e-27 AT3G12800 391 / 7e-138 short-chain dehydrogenase-reductase B (.1) Lus10026419 [exp] 108 / 2e-27 AT3G51680 367 / 9e-128 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029369 [exp] 107 / 2e-27 AT3G51680 226 / 3e-73 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10018323 [exp] 108 / 3e-27 AT3G12800 395 / 4e-139 short-chain dehydrogenase-reductase B (.1) Lus10015821 [exp] 108 / 1e-26 AT1G24360 427 / 5e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13561 [poplar] [flax] adh_short_C2 Enoyl-(Acyl carrier protein) reductase
Representative CDS sequence Show only first row Show all	>Potri.008G149201.1 pacid=42808188 polypeptide=Potri.008G149201.1.p locus=Potri.008G149201 ID=Potri.008G149201.1.v4.1 annot-version=v4.1 ATGGAAGAACAAAGAAAACCTCAGTTTCCACCACAGACTCAACCTCAGCAACCAGGTAAAGAATATGTCATGTGCCCACTTCCGCTAGCCATAAACCCTG ACTACAAGCCTTCCGAAAAACTCAACGGAAAGGTAGCTCTGGTGACTGGAGGGGATTCCGGGATAGGAAGATCTGTATGCTACCATTTTGCATTAGAGGG TGCAACTGTGGCCTTTACATATGTACAAGGCATTGAGGACAGAGACAAGGATGACACCCTAAAGATGCTACTGAAGGCTAAGTCAAGCGATGCAGAGGAT CCAATTGCCATAGCTACTGATGTTTCATCAGAAGAAGATTGCAAGAGGGTTGTCGAACAAGTTGCGAGTAAATATGGGCGGATTGATATTTTGGTCAACA ATGCTGGCGTACAGCATTATACCAACTTGGTAGAAGAGATTACCGAGGAATGGCTTGTGAGGATGTTCAGAACCAACATATTTGGTTATTTCTTCATGAC CAAGCATTCATTAAAGCACATGAAGGAAGGAAGTTGTATAATCAACACAGCATCTGTTACTGCTTATGCTGGCTCCCCTCACCAATTACTAGACTATTTG TCTACCAAGGGATCGATTGTTTCCTTCACTAGGGGATTGGCTCTAAGACTTGTGGATAAAGGAATTCGTGTCAATGGTGTGGCTCCAGGTCCGATCTGGA CGCCACTGCAACCCGCATCTCTGCCTGCATACGAGGTAGAATACTTGGGGTCTGACGTGCCAATGAGAAGAGCAGGACAGCCTTACGAAATGGCACCTTC TTATGTCTTCCTGGCTTCCAATCAGTGCTCGTCTTACATGACTGGCCAAGTTCTTCATCCTAATGGGGGTACGATTATCAATGGTTAA
AA sequence Show only first row Show all	>Potri.008G149201.1 pacid=42808188 polypeptide=Potri.008G149201.1.p locus=Potri.008G149201 ID=Potri.008G149201.1.v4.1 annot-version=v4.1 MEEQRKPQFPPQTQPQQPGKEYVMCPLPLAINPDYKPSEKLNGKVALVTGGDSGIGRSVCYHFALEGATVAFTYVQGIEDRDKDDTLKMLLKAKSSDAED PIAIATDVSSEEDCKRVVEQVASKYGRIDILVNNAGVQHYTNLVEEITEEWLVRMFRTNIFGYFFMTKHSLKHMKEGSCIINTASVTAYAGSPHQLLDYL STKGSIVSFTRGLALRLVDKGIRVNGVAPGPIWTPLQPASLPAYEVEYLGSDVPMRRAGQPYEMAPSYVFLASNQCSSYMTGQVLHPNGGTIING

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54870			NAD(P)-binding Rossmann-fold s...		Potri.008G149201 [exp]	0	1
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Potri.006G058600 [exp]	3.16	0.9724	Pt-PGIP.4
AT5G49450	bZIP	ATBZIP1	basic leucine-zipper 1 (.1)		Potri.010G142900 [exp]	4.58	0.9615
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Potri.008G141100 [exp]	12.16	0.9511
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Potri.004G081300 [exp]	13.67	0.9604
AT1G58420			Uncharacterised conserved prot...		Potri.014G014500 [exp]	13.96	0.9627
AT3G42880			Leucine-rich repeat protein ki...		Potri.006G139700 [exp]	16.52	0.9587
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.004G219900 [exp]	19.07	0.9653
AT5G11520		YLS4, ASP3	YELLOW-LEAF-SPECIFIC GENE 4, a...		Potri.006G241600 [exp]	21.21	0.9251	AAT.2
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G223500 [exp]	22.11	0.9653
AT5G25320			ACT-like superfamily protein (...		Potri.018G025500 [exp]	28.61	0.9510

Compare expression of checked genes

Potri.008G149201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.