Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22000 186 / 4e-55 RHF2A, CIC7E11 RING-H2 group F2A (.1.2.3) AT4G14220 142 / 1e-38 RHF1A RING-H2 group F1A (.1) AT5G38895 60 / 3e-10 RING/U-box superfamily protein (.1.2.3) AT4G00335 59 / 3e-10 RHB1A RING-H2 finger B1A (.1.2.3) AT3G02290 58 / 2e-09 RING/U-box superfamily protein (.1.2) AT5G15790 57 / 5e-09 RING/U-box superfamily protein (.1.2) AT3G58720 56 / 9e-09 RING/U-box superfamily protein (.1.2) AT5G56340 57 / 1e-08 ATCRT1 RING/U-box superfamily protein (.1) AT4G23450 54 / 3e-08 AIRP1, AtAIRP1 ABA Insensitive RING Protein 1, RING/U-box superfamily protein (.1.2.3) AT5G41350 53 / 8e-08 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G092300 [exp] 582 / 0 AT4G14220 248 / 6e-79 RING-H2 group F1A (.1) Potri.001G213800 [exp] 193 / 1e-57 AT5G22000 385 / 1e-132 RING-H2 group F2A (.1.2.3) Potri.016G066400 [exp] 177 / 2e-51 AT5G22000 386 / 4e-133 RING-H2 group F2A (.1.2.3) Potri.006G200200 [exp] 167 / 1e-47 AT5G22000 385 / 9e-133 RING-H2 group F2A (.1.2.3) Potri.017G100100 [exp] 66 / 8e-12 AT5G15790 230 / 6e-76 RING/U-box superfamily protein (.1.2) Potri.001G068700 [exp] 64 / 1e-11 AT5G38895 161 / 1e-49 RING/U-box superfamily protein (.1.2.3) Potri.003G161600 [exp] 62 / 5e-11 AT5G15790 167 / 2e-51 RING/U-box superfamily protein (.1.2) Potri.010G140300 [exp] 61 / 1e-10 AT5G38895 129 / 4e-37 RING/U-box superfamily protein (.1.2.3) Potri.004G114800 [exp] 61 / 2e-10 AT5G15790 246 / 6e-83 RING/U-box superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010513 [exp] 255 / 2e-81 AT4G14220 236 / 3e-74 RING-H2 group F1A (.1) Lus10034049 [exp] 241 / 1e-75 AT4G14220 228 / 2e-71 RING-H2 group F1A (.1) Lus10013606 [exp] 174 / 1e-50 AT5G22000 337 / 4e-114 RING-H2 group F2A (.1.2.3) Lus10021245 [exp] 174 / 4e-50 AT5G22000 336 / 2e-113 RING-H2 group F2A (.1.2.3) Lus10008447 [exp] 171 / 5e-49 AT5G22000 397 / 4e-137 RING-H2 group F2A (.1.2.3) Lus10029351 [exp] 144 / 1e-39 AT5G22000 270 / 7e-89 RING-H2 group F2A (.1.2.3) Lus10016195 [exp] 136 / 7e-37 AT5G22000 276 / 2e-91 RING-H2 group F2A (.1.2.3) Lus10013374 [exp] 120 / 5e-30 AT5G22000 397 / 7e-137 RING-H2 group F2A (.1.2.3) Lus10017788 [exp] 62 / 8e-11 AT4G00335 204 / 3e-67 RING-H2 finger B1A (.1.2.3) Lus10032270 [exp] 57 / 3e-09 AT5G41350 192 / 2e-61 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.008G149300.1 pacid=42805778 polypeptide=Potri.008G149300.1.p locus=Potri.008G149300 ID=Potri.008G149300.1.v4.1 annot-version=v4.1 ATGGCGAGTTTTACTTCGCTTTCCTCTTCAATGTCTGACGCTCCAATGATCTTAGTTCCCGCGTATTCATCTTCTTCTTCTTCTTTGGGAGCTGGAGTCG AGGATGCTTTCGAAGACGACGCCTGCAGTATTTGCCTCGATCCTTTCACCCCTCAAGACCCTGCTACTGATACCTGCTGCAAACATGAATATCATCTTCA GTGTATTGTTGAATGGTCACAGAGAAGCAAAGAGTGCCCGATATGCTGGCAGCTTCTTGTACTGAAAGACCCTGCCAGCCAAGAGCTTCTAGCTGCTGTT GAGACTGAGAGGCTTTTCAGGCCAAGGAACTCTAACCCTGCGTCCATGATCGTTCATCATTTGGATGAAGATTATGATGTAGAGCAGGATTCCTATTCAG ATGACTCTGATTTCGACGATCATGTTATGCAGCATCTATCTGCTTCTGCTGCCAGCAGAGCTCGTTATGTTTGCAAAAGGGAGAGGCATAGGTCTACCGG ACTTGGTCCCTCCCAGGTTCTTGTCTTTACCTCTCCTGAACATGTATCCACTGTTCAGCAAACATGCACTTCACCAGAAGAAGGTCAAATTTTAAGTTAT GGGTCATCAGTGATTAATTCATCAACTCCTGGTACACCATCAGTTAAAATTCAAAATTTGTCATCCGTGGCCCCTCCTGTTGTGAACCAAGTCTCCACCA CTGCTGTCAATAGCCCTTTTAAACCCAGGATTCTCTTTAGACAGCCACCAATTGATCCTCCCCAGGGGCAAGGCTCATCAGATTTGTCATCTCTCTCAGA ATCTATTAAATCTAAATGGTTTGCTGCTTCAGCCAGGTACAAGGAATCACTTTCAAAAGGTACCAGAGGTATGAAGGAAAAGCTACTTGCAAGGAATAAT TCAGTTAAGGAGCTGAGCAAAGAAGTTCAGAGGGAGATGAGTGCAGGCATTGCTGGTGTTGCACGAATGATTGAGCGCTTGGATCTTACTTCAAAACGCG CTGGACCCTCCATGTCTGATTCTGATTTTACTAGGGGGACATCAAATTTCTCCTGGAAGGGTAAGGGTGTGGAACAGAACATCATTGCTCAGGCTTTGGC CAAACAAAGTGAGGAAATTGCTCATGATACAAGTTTAGGTGCTTCCTCACATGCCTCTGCTACTGTCCCAGCCCAAGTGGAAATCTCCCATGCGCAGGTT TGGAAACCACTGAAGTTTTAA
AA sequence Show only first row Show all	>Potri.008G149300.1 pacid=42805778 polypeptide=Potri.008G149300.1.p locus=Potri.008G149300 ID=Potri.008G149300.1.v4.1 annot-version=v4.1 MASFTSLSSSMSDAPMILVPAYSSSSSSLGAGVEDAFEDDACSICLDPFTPQDPATDTCCKHEYHLQCIVEWSQRSKECPICWQLLVLKDPASQELLAAV ETERLFRPRNSNPASMIVHHLDEDYDVEQDSYSDDSDFDDHVMQHLSASAASRARYVCKRERHRSTGLGPSQVLVFTSPEHVSTVQQTCTSPEEGQILSY GSSVINSSTPGTPSVKIQNLSSVAPPVVNQVSTTAVNSPFKPRILFRQPPIDPPQGQGSSDLSSLSESIKSKWFAASARYKESLSKGTRGMKEKLLARNN SVKELSKEVQREMSAGIAGVARMIERLDLTSKRAGPSMSDSDFTRGTSNFSWKGKGVEQNIIAQALAKQSEEIAHDTSLGASSHASATVPAQVEISHAQV WKPLKF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Potri.008G149300 [exp]	0	1
AT2G43160			ENTH/VHS family protein (.1.2....		Potri.014G151300 [exp]	3.46	0.8411
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Potri.015G060100 [exp]	8.30	0.8702
AT5G26780		SHM2	serine hydroxymethyltransferas...		Potri.002G109200 [exp]	14.89	0.8669	SHMT3
AT4G03340			Core-2/I-branching beta-1,6-N-...		Potri.019G104600 [exp]	15.71	0.8358
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Potri.015G135500 [exp]	16.12	0.8397
AT4G29680			Alkaline-phosphatase-like fami...		Potri.006G150900 [exp]	16.94	0.8110
AT2G40120			Protein kinase superfamily pro...		Potri.010G188400 [exp]	21.35	0.8658
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.010G198250 [exp]	22.91	0.8351
AT5G60720			Protein of unknown function, D...		Potri.009G009500 [exp]	23.06	0.8634
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.010G229600 [exp]	23.81	0.8484	RAB1.1

Compare expression of checked genes

Potri.008G149300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.