Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06030 680 / 0 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT1G09000 604 / 0 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT1G54960 566 / 0 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT1G53570 275 / 3e-83 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT1G63700 267 / 6e-78 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT4G08500 228 / 1e-65 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT3G13530 233 / 8e-65 MAPKKK7, MAP3KE1 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) AT5G66850 226 / 3e-64 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT3G07980 229 / 1e-63 MAPKKK6, MAP3KE2 MAP3K EPSILON PROTEIN KINASE 2, mitogen-activated protein kinase kinase kinase 6 (.1) AT4G08470 207 / 1e-58 MEKK3, MAPKKK10 MAPK/ERK kinase kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G092000 [exp] 1134 / 0 AT3G06030 698 / 0.0 NPK1-related protein kinase 3 (.1) Potri.013G022700 [exp] 678 / 0 AT1G09000 713 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Potri.005G033400 [exp] 617 / 0 AT1G09000 680 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Potri.007G106800 [exp] 268 / 2e-80 AT1G53570 582 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.005G062500 [exp] 267 / 7e-80 AT1G53570 566 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.001G102900 [exp] 263 / 2e-76 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.015G146700 [exp] 262 / 3e-76 AT1G63700 826 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.012G143900 [exp] 262 / 5e-76 AT1G63700 766 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.003G129000 [exp] 253 / 7e-73 AT1G63700 850 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034060 [exp] 774 / 0 AT3G06030 730 / 0.0 NPK1-related protein kinase 3 (.1) Lus10010519 [exp] 769 / 0 AT3G06030 726 / 0.0 NPK1-related protein kinase 3 (.1) Lus10015185 [exp] 589 / 0 AT1G09000 692 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Lus10031506 [exp] 573 / 0 AT1G09000 659 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Lus10002096 [exp] 272 / 2e-78 AT2G13680 1077 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10032279 [exp] 265 / 3e-77 AT1G63700 904 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10024645 [exp] 263 / 2e-76 AT1G63700 905 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10027496 [exp] 258 / 1e-74 AT1G63700 855 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10000829 [exp] 251 / 2e-74 AT1G53570 537 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Lus10014976 [exp] 254 / 7e-74 AT1G63700 704 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.008G149500.1 pacid=42808604 polypeptide=Potri.008G149500.1.p locus=Potri.008G149500 ID=Potri.008G149500.1.v4.1 annot-version=v4.1 ATGCAAGACATTTTTGGATCGGTTCGTCGATCCTTAGTGTTTAAATCGACTTCAGGAGGAGGAGGAGAAGATGGAGGATTCAGTGGTTTCGTTGAGAAAA TCGGCTCTAGTATTCGCACATCGCGAATCGGCCTCTTCGCCAAGCCTTCAATACCGTCCTTGCCTCCGCCATCTAAAAAAGAAGATGCGCCGCCGATCAG GTGGAGAAAGGGTGAGTTGATTGGATGCGGCGCTTTTGGTAGGGTTTATATGGGGATGAATCTTGATTCTGGAGAACTTCTCGCTGTTAAACAGGTTTCG ATTGCAGCCAGTAGTGCTTCTAAGGAGAAAACGCAGGCACACATCAGAGAGCTCGAGGAAGAAGTGAAGCTTCTCAAGAATCTTTCGCATCCAAATATTG TTAGATACCTGGGAACTGCCAGAGAGGATGATTCGTTGAATATTTTATTGGAATTTGTACCGGGTGGATCCATATCATCGTTACTGGGAAAATTTGGATC TTTCCCTGAGTCGGTAATAAGAATGTATACGAAACAGCTGTTGTTGGGATTGGAATACCTTCACAAGAATGGTATTATGCATAGGGACATCAAGGGGGCA AACATTCTTGTTGATAACAAGGGTTGCATTAAACTTGCTGACTTTGGAGCATCCAAGAAAGTAGTTGAACTGGCTACTATAAATGGTGCCAAGTCAATGA AAGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTCCAGACTGGGCATAGCTTTTCTGCTGATATATGGAGCGTTGGATGCACTGTGATTGAGATGGC CACAGGGAAACCTCCATGGAGTCAACAGTATCAGGAGGTTGCTGCTCTCTTCCACATTGGGACAACTAAATCTCATCCTCCAATTCCTGAACATCTATCT ATTGAGGCAAAGGATTTCTTGTTAAAATGTCTTCAGGAGGTACCAAACTTAAGGCCTGCTGCATCTGAGTTATTGCAGCATCCATTTGTCACTGGGGAAT ATCAGGAAACTCATTCAGTATTCCGCAATTCAGTTAGAGAATCTGGAAATCTGATAGCTGCGACCGGGTCGAATCTCAAGAGCTCCATGAACTCTGTGAT CAGAAGGTCAACATGTGCAGGATTGAAGGATGTTTGTGAAATGGGTAGTGTGAAGTCCTCAACTGTATATCGTGATAACTTGTCAAGATCAAGATCCTAC TGGGGTGCAGCAAATTTTGATGATGACATGTGTCTGATAGATGATAAAGATGATTTTGCGGTTAGTGCATCCACTAGGTTCAAATCTACCTTAGCATCTG CTGATTTAAATAAGAGTGTCAACCCAATGTGCGAACCCTTGGATGACTGGCCATGCAAGTTTGATGAAGATCCATTGTTTAAGAGAAGTGGATATAACTT GTCTTGTAGTCAATCAAACCATGAAGCTATTGATATCCATGAAGCATCCGGTAAGGGACAGAACGACTTCACATTTCCATGTGGGCCAGTGGTACCTGAG GATGATGATGAAGTTACCGAGTCAAAAATTAGAGCATTTTTGGATGAGAAGGCTTTAGATTTGAAGAAGCTGCAGACACCTCTATATGAAGAGTTTTACA ATAGCACTTTGAATACCATGGGTGCTCCAACTGCAGTTGGAACAGAAAACAGTGAAAATCCTACACATTTACCAAGTTTACCCCCCAAAAGCAGGTCACC CAAACGTTTGCCTAGCAGAAGACTCTCTGCAGTTGTTGATGCTCCCAGCATTGCAAGTCCTGGTCGTCAAACTAATCATGTAGCAAACGAAAGTAGTATA CACAATCGAGCTTTGCAGGAAATTCAGCCACCTCAGCTTAGTGAGTGGAAAGAGTTTCTTCATGATGGCCAGCAGGAAACACTTACGTCTAGTACAAGCT TCTCTGAGAGGCAAAGAAAATGGGAAGAAGAGCTTTATCAAGAACTTGAAAGAAAACGAGAGATGATGCGGCAGGCAGGCGTGGGAGGGAAGACATCATC TCCGAAGGATCCAATTCTAATGCAACAGAGAGAGCGGTTACGATTTGCATTTATTGGGAAATAA
AA sequence Show only first row Show all	>Potri.008G149500.1 pacid=42808604 polypeptide=Potri.008G149500.1.p locus=Potri.008G149500 ID=Potri.008G149500.1.v4.1 annot-version=v4.1 MQDIFGSVRRSLVFKSTSGGGGEDGGFSGFVEKIGSSIRTSRIGLFAKPSIPSLPPPSKKEDAPPIRWRKGELIGCGAFGRVYMGMNLDSGELLAVKQVS IAASSASKEKTQAHIRELEEEVKLLKNLSHPNIVRYLGTAREDDSLNILLEFVPGGSISSLLGKFGSFPESVIRMYTKQLLLGLEYLHKNGIMHRDIKGA NILVDNKGCIKLADFGASKKVVELATINGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFHIGTTKSHPPIPEHLS IEAKDFLLKCLQEVPNLRPAASELLQHPFVTGEYQETHSVFRNSVRESGNLIAATGSNLKSSMNSVIRRSTCAGLKDVCEMGSVKSSTVYRDNLSRSRSY WGAANFDDDMCLIDDKDDFAVSASTRFKSTLASADLNKSVNPMCEPLDDWPCKFDEDPLFKRSGYNLSCSQSNHEAIDIHEASGKGQNDFTFPCGPVVPE DDDEVTESKIRAFLDEKALDLKKLQTPLYEEFYNSTLNTMGAPTAVGTENSENPTHLPSLPPKSRSPKRLPSRRLSAVVDAPSIASPGRQTNHVANESSI HNRALQEIQPPQLSEWKEFLHDGQQETLTSSTSFSERQRKWEEELYQELERKREMMRQAGVGGKTSSPKDPILMQQRERLRFAFIGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06030		AtANP3, MAPKKK1...	NPK1-related protein kinase 3 ...		Potri.008G149500 [exp]	0	1
AT5G48310			unknown protein		Potri.014G172000 [exp]	2.00	0.9757
AT1G18370		HIK, ATNACK1	HINKEL, ARABIDOPSIS NPK1-ACTIV...		Potri.015G044600 [exp]	5.09	0.9737	HIK.3
AT1G02730		SOS6, ATCSLD5	SALT OVERLY SENSITIVE 6, CELLU...		Potri.002G200300 [exp]	6.48	0.9711	ATCSLD5.2
AT3G06030		AtANP3, MAPKKK1...	NPK1-related protein kinase 3 ...		Potri.010G092000 [exp]	7.93	0.9661	Pt-ANP3.2
AT5G27550			P-loop containing nucleoside t...		Potri.013G020700 [exp]	9.53	0.9664
AT4G32830		ATAUR1	ataurora1 (.1)		Potri.006G235000 [exp]	10.19	0.9687
AT5G04320			Shugoshin C terminus (.1.2)		Potri.009G006100 [exp]	10.24	0.9678
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Potri.008G093800 [exp]	10.67	0.9674	SNAP30.2
AT5G60930			P-loop containing nucleoside t...		Potri.002G106100 [exp]	12.48	0.9621
AT2G20590			Reticulon family protein (.1.2...		Potri.007G137700 [exp]	13.26	0.9663

Compare expression of checked genes

Potri.008G149500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.