Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19280 644 / 0 FHA RAG1, KAPP ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) AT4G31750 89 / 3e-19 WIN2 HOPW1-1-interacting 2 (.1) AT5G10740 85 / 1e-17 Protein phosphatase 2C family protein (.1) AT1G07160 79 / 1e-15 Protein phosphatase 2C family protein (.1) AT3G51470 77 / 4e-15 Protein phosphatase 2C family protein (.1) AT5G24940 78 / 6e-15 Protein phosphatase 2C family protein (.1) AT5G53140 77 / 9e-15 Protein phosphatase 2C family protein (.1) AT2G30020 77 / 1e-14 Protein phosphatase 2C family protein (.1) AT3G17250 71 / 8e-13 Protein phosphatase 2C family protein (.1) AT1G43900 70 / 9e-13 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G091500 [exp] 963 / 0 AT5G19280 636 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Potri.018G013900 [exp] 92 / 3e-20 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.006G267600 [exp] 89 / 3e-19 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.005G102500 [exp] 82 / 1e-16 AT3G51470 496 / 8e-177 Protein phosphatase 2C family protein (.1) Potri.005G186001 [exp] 79 / 4e-16 AT1G43900 422 / 4e-149 Protein phosphatase 2C family protein (.1) Potri.015G019200 [exp] 79 / 8e-16 AT5G53140 492 / 5e-175 Protein phosphatase 2C family protein (.1) Potri.012G002100 [exp] 78 / 2e-15 AT5G53140 486 / 2e-172 Protein phosphatase 2C family protein (.1) Potri.013G099400 [exp] 78 / 3e-15 AT1G07160 272 / 1e-87 Protein phosphatase 2C family protein (.1) Potri.014G115500 [exp] 78 / 3e-15 AT3G62260 461 / 2e-162 Protein phosphatase 2C family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041216 [exp] 736 / 0 AT5G19280 608 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Lus10010521 [exp] 731 / 0 AT5G19280 614 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Lus10021929 [exp] 723 / 0 AT5G19280 595 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Lus10034062 [exp] 674 / 0 AT5G19280 549 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Lus10026908 [exp] 86 / 3e-18 AT4G31750 484 / 1e-174 HOPW1-1-interacting 2 (.1) Lus10020104 [exp] 86 / 7e-18 AT4G31750 523 / 0.0 HOPW1-1-interacting 2 (.1) Lus10042430 [exp] 83 / 2e-17 AT4G31750 452 / 2e-162 HOPW1-1-interacting 2 (.1) Lus10026239 [exp] 83 / 2e-17 AT4G31750 454 / 3e-163 HOPW1-1-interacting 2 (.1) Lus10019012 [exp] 84 / 5e-17 AT5G53140 474 / 2e-167 Protein phosphatase 2C family protein (.1) Lus10014926 [exp] 79 / 8e-16 AT5G53140 448 / 3e-158 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C CL0357 [poplar] [flax] SMAD-FHA PF00498 [poplar] [flax] FHA FHA domain
Representative CDS sequence Show only first row Show all	>Potri.008G149700.1 pacid=42806735 polypeptide=Potri.008G149700.1.p locus=Potri.008G149700 ID=Potri.008G149700.1.v4.1 annot-version=v4.1 ATGGCGATGATATTACAAGGAAGCATTGTCGGTGTCCTCCTCCTCCTCCTTATGCTGCTTCTGATCCTCCTCCTTATCCTCCTCGCCTGTAAACCATGGC GCTTCTTCTCCTCCCTCTCTTCCCCTTCTCGCGCGCTTAAGGTTGGTGACTTAGAGAGGCCCCTTGTCTTGGATGATGCAAATGCCCATGGCCAAAGCAA TGAATCAACTAGAAGTAATGATCTAGAGGGAGCATGTGGTCAAAATGAAGGGCTCTTGCATTCACCTCGAATGCATGACCTTGTATATAAACAGAGGCTT CCTTCCGCATCTCTCCAATTGAACGAAGGTGATAGTGTTGTTTTAAATTCAGACCCGATAGAGGATCTTTCAGTTGGCCAGACCATCAGGTTCCTTTCAT TGACAGAGCGCTTAGCTGAAGTGCAAACACATGTTAGACAGGAAGATCAGAATCCTAACTTGAAAAATGATTTACTTCAAGACTTAGCGCCTAAGGCCAT CGCTGATCAAAGAAGTTGTCTCTCTCTGGAAGTCATCTCCGGTCCTTCTTGTGGACTCCGTTGCTCTGTACAGCCAACAAGTGCTTCGAGGCTTCCACTG ACCCTTGGAAGGGTTTCCAGTGACTTGCTATTGAAGGATTCAGAGGTGTCGGGGAAGCACGCGATGATCAACTGGAACGCGGATAAAAATAAATGGGAGT TGGTAGACATGGGTAGCCTCAATGGAACATTTTTGAATTCTCAGCTGATTAGCCATCCTGATTCTGGAAGTAGACATCGGGGTGACCCTGTTGAGCTTTC AAGTGGAGATATAATAACTCTTGGCACAACCTCAAATGTTCATGTCCATGTGACATCTAAATCTGAGTGTCAGACACCCTTTGGCATAGGTATAGCATCA GATCCCATGGCTTTTCGCCGAGGAGGAAAGAAGCTTGCCATGGAAGATGTGTGCTATTATCAGTGGCCCCTTCCTGGCATTCCCCAGTTTGGAGTGTTTG GTATTTGTGATGGACATGGTGGAGTAGCTGCTGCAAAATCTGCTAGCAAAATGCTTCCTGAGAAGGTTGCCAGTATTCTATCAGATTCTCTTATAAGGGA GAGGGTTTTATCGCAATGTGATGCCTCAGATGTTCTTAGAGTTGCATTTTATCAAACTGAAGCTAATATGAATAACTATTACGAGGGTTGTGCTGCAACA GTGCTTCTGGTTTGGGCTGATAGCAATGAAAATTTATTTGCACAATGTGCAAATGTTGGAGACTCAGCTTGCTTTATGAATGTTGATGGGAAGCAGATTA AGATGACAGAAGATCACAGAGTAAGTAGTTACTCTGAAAGACTTCGACTTAATGAAACTGGAGTACCATTGAGAGATGGGGAAACACGGCTTTATGGTTT GAACCTTGCTCGAATGCTTGGTGACAAATTTCTGAAACAGCAGGAACCCCGCTTTAGTTCAGAGCCTTATATAAGTGAAGCCATACATATTAATCAAGAA AGTGGTGCTTTTGCACTATTGGCAAGTGATGGCTTTTGGGATGTCATCAGTCTTAAGAAGGCCGCCCAGCTTGTCACGCAGGCAAAGGAAAGATATTTCG AAGAAGGAGGGAATATTTCGGAGAAGGTTGCAAATTTTTTGTTGAGCGAGGCTAAAACATTGCGAACAAAGGACAACACCTCTATACTTTTCTTGGAGTT TGACAGAAAATTTAGAATATCTTGTAAAGTTGATTCTTGA
AA sequence Show only first row Show all	>Potri.008G149700.1 pacid=42806735 polypeptide=Potri.008G149700.1.p locus=Potri.008G149700 ID=Potri.008G149700.1.v4.1 annot-version=v4.1 MAMILQGSIVGVLLLLLMLLLILLLILLACKPWRFFSSLSSPSRALKVGDLERPLVLDDANAHGQSNESTRSNDLEGACGQNEGLLHSPRMHDLVYKQRL PSASLQLNEGDSVVLNSDPIEDLSVGQTIRFLSLTERLAEVQTHVRQEDQNPNLKNDLLQDLAPKAIADQRSCLSLEVISGPSCGLRCSVQPTSASRLPL TLGRVSSDLLLKDSEVSGKHAMINWNADKNKWELVDMGSLNGTFLNSQLISHPDSGSRHRGDPVELSSGDIITLGTTSNVHVHVTSKSECQTPFGIGIAS DPMAFRRGGKKLAMEDVCYYQWPLPGIPQFGVFGICDGHGGVAAAKSASKMLPEKVASILSDSLIRERVLSQCDASDVLRVAFYQTEANMNNYYEGCAAT VLLVWADSNENLFAQCANVGDSACFMNVDGKQIKMTEDHRVSSYSERLRLNETGVPLRDGETRLYGLNLARMLGDKFLKQQEPRFSSEPYISEAIHINQE SGAFALLASDGFWDVISLKKAAQLVTQAKERYFEEGGNISEKVANFLLSEAKTLRTKDNTSILFLEFDRKFRISCKVDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Potri.008G149700 [exp]	0	1
AT5G49570		ATPNG1	peptide-N-glycanase 1 (.1)		Potri.013G039600 [exp]	6.48	0.8107
AT5G26240		ATCLC-D, CLC-D	chloride channel D (.1)		Potri.010G090100 [exp]	8.83	0.7769
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Potri.006G182100 [exp]	21.90	0.8092
AT2G46080			unknown protein		Potri.014G088600 [exp]	24.24	0.7986
					Potri.004G163032 [exp]	28.14	0.7790
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Potri.008G192700 [exp]	35.74	0.7955
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Potri.001G406300 [exp]	38.36	0.7315
					Potri.001G255904 [exp]	42.98	0.7880
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.001G255900 [exp]	43.26	0.7811
AT1G66120			AMP-dependent synthetase and l...		Potri.006G036200 [exp]	49.19	0.6914

Compare expression of checked genes

Potri.008G149700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.