Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19330 1043 / 0 ARIA ARM repeat protein interacting with ABF2 (.1.2) AT5G13060 801 / 0 ABAP1 ARMADILLO BTB protein 1 (.1) AT3G06190 85 / 2e-17 ATBPM2 BTB-POZ and MATH domain 2 (.1.2) AT5G19000 80 / 1e-15 ATBPM1 BTB-POZ and MATH domain 1 (.1.2) AT3G03740 73 / 2e-13 ATBPM4 BTB-POZ and MATH domain 4 (.1) AT3G43700 70 / 2e-12 ATBPM6 BTB-POZ and MATH domain 6 (.1) AT3G46510 69 / 6e-12 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT5G67340 68 / 1e-11 ARM repeat superfamily protein (.1) AT2G39760 66 / 4e-11 ATBPM3 BTB/POZ/MATH-domains containing protein (.1.2) AT2G23140 66 / 8e-11 RING/U-box superfamily protein with ARM repeat domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G090900 [exp] 1092 / 0 AT5G19330 961 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.005G210000 [exp] 993 / 0 AT5G19330 977 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.002G052700 [exp] 979 / 0 AT5G19330 994 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.010G029500 [exp] 83 / 2e-16 AT3G06190 580 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.004G194200 [exp] 81 / 4e-16 AT3G03740 573 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.001G184200 [exp] 79 / 7e-16 AT3G03740 342 / 1e-116 BTB-POZ and MATH domain 4 (.1) Potri.009G156500 [exp] 78 / 4e-15 AT3G03740 580 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.008G200700 [exp] 77 / 1e-14 AT3G06190 582 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.019G039500 [exp] 74 / 1e-13 AT3G03740 618 / 0.0 BTB-POZ and MATH domain 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034070 [exp] 1094 / 0 AT5G19330 1092 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10010527 [exp] 1080 / 0 AT5G19330 1103 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10042583 [exp] 806 / 0 AT5G19330 822 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10022039 [exp] 802 / 0 AT5G13060 821 / 0.0 ARMADILLO BTB protein 1 (.1) Lus10041235 [exp] 84 / 8e-18 AT3G06190 339 / 8e-117 BTB-POZ and MATH domain 2 (.1.2) Lus10021946 [exp] 82 / 2e-16 AT3G06190 620 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Lus10027086 [exp] 81 / 1e-15 AT2G43940 163 / 5e-46 HARMLESS TO OZONE LAYER 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10003365 [exp] 73 / 4e-13 AT3G03740 601 / 0.0 BTB-POZ and MATH domain 4 (.1) Lus10008421 [exp] 73 / 4e-13 AT3G03740 599 / 0.0 BTB-POZ and MATH domain 4 (.1) Lus10039047 [exp] 71 / 2e-12 AT4G16490 549 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Potri.008G150100.1 pacid=42806918 polypeptide=Potri.008G150100.1.p locus=Potri.008G150100 ID=Potri.008G150100.1.v4.1 annot-version=v4.1 ATGGAGCTGAAGAAGCACCAAGATCAGAGAGTCCCTGAGAGGAAGGGGCAAAAGAGGAAACTAGAGGAGGAAATCGAGGAGGGGAAGAGGGAGATCTCGG CGGCGGAGGCGGCAGCCGCAGCTCCATACGGTGAGGCACGGAGAGTGATATTGAACGAGGTCTATACCCAGGTTAATATCCTCAACTCTACCTTCTCATG GCACGAAACTCATCGCGGTGCTGCTAAACGCGCCACTCACATCCTCGCGGAACTCGCCAAGAACGAGGAAGTGGTGAACGTGATTGTTGAAGGAGGTGCA GTTCCTGCACTGGTTAAGCATCTTGAAGCACCACCGTCAAGTGAAATTGATCACAATAACTCGAAGCCTTTTGAGCACGAGGTCGAGAAAGAAAGTGCTT TTGCGCTTGGACTGCTTGCTGTCAAGCCAGAGCATCAGCAAATCATTGTCGACGCTGGGGCTTTGTCACATCTTGTGAGCTTGTTGAAGAGGCAGAGGGA TGTTCACAGGGACGGTTCTAATTCTCGAGCTGTGAATAGTGTAATTAGGAGAGCTGCTGATGCTATTACCAATCTTGCTCATGAGAACAGCAGCATTAAA ACTCGTGTTAGGATGGAAGGTGGGATTCCTCCTCTGGTTGAGTTGCTCGAATTCACTGACACAAAGGTGCAAAGAGCAGCTGCTGGGGCACTTCGAACCC TGGCTTTTAAAAATGATGAGAATAAGAATCAGATAGTTGAATGCTATGCTCTTCCCACCCTTATATTAATGTTGCGATCTGATGATGCTGCCATACACTA TGAAGCAGTAGGTGTGATTGGGAATCTGGTACATTCGTCCCCAAACATTAAAAGAGAAGTTCTTGCTGCTGGGGCTCTGCAACCTGTTATAGGTTTACTT AGCTCCTGCTGCTCTGAGAGCCAAAGGGAGGCTGCTTTATTACTTGGACAGTTTGCAGCAACCGATTCAGATTGCAAGGTACACATTGTACAAAGGGGTG CAGTTAGACCTTTGATTGAGATGCTCCAGTCTCCTGATGTCCAACTGAGGGAAATGTCAGCATTTGCACTGGGGAGGTTGGCGCAGGACACACACAACCA AGCTGGTATAGCCCACAACGGTGGTTTGGTGCCATTACTCAAGCTTCTGGATTCAAAGAATGGATCTCTTCAACATAATGCTGCATTTGCTCTGTATGGT CTTGCAGATAATGAGGACAATGTCTCTGATTTTATCAGTGTGGGAGGAGTTCAGAAGCTGCAGGATGGAGAGTTTATTGTTCAAGCGACAAAAGATTGCG TAGCCAAGACTTTGAAAAGATTAGAGGAGAAGATTCATGGAAGAGTTTTAAACCACTTATTATATCTAATGCGTGTAGCGGAGAAGGCTGTCCAACGACG TGTTGCTCTAGCTCTTGCACATCTTTGTTCTCCAGATGACCAGAGAGCAATATTCATTGATAATTGTGGATTGGATTTACTTCTTGGGCTTCTTGGCTCT TCAAGCCTGAAGCAACAACTTGATGGAGCCATAGCTCTTTACAGGCTGGCCAACAAAGCAACGACCCTTTCTCCTGTGGATGCAGCTCCTCCTTCTCCAA CACCGCAGGTATATTTAGGGGAGCAGTATGTAAACAATCCTACATTGTCTGACGTTACCTTTCTAGTTGAAGGTAGAAGATTCTATGCCCATAGAATTTG CCTGCTTGCTTCTTCAGATGCATTTCGGGCAATGTTTGATGGTGGTTATCGGGAAAAGGATGCAAGGGACATTGAAATTCCGAATATTAGATGGGAGGTT TTCGAGTTGATGATGAGATTCATTTACACAGGTTCAGTAGATGTTACATTAATTATTGCACAGGATCTCCTCAGGGCTGCTGATCAGTATCTCTTGGAGG GGCTTAAGCGACTGTGCGAGTATACCATAGCACAGGATATAACATTGGAAAACATTGGAAGCATGTATGAACTTTCAGAAGCTTTCCATGCTATTTCATT GAGGCACAGATGCATTTTGTTCATTTTGGAGCAGTTTGATAAATTGAGTGATAAGCCCAGGCACTCTCAATTAATCCAGCGCATAATACCCGAGATTCGC AATTACTTTGAAAAAGCCCTCACCAACCCTCACCAACATAACTCGCGGCTGTAG
AA sequence Show only first row Show all	>Potri.008G150100.1 pacid=42806918 polypeptide=Potri.008G150100.1.p locus=Potri.008G150100 ID=Potri.008G150100.1.v4.1 annot-version=v4.1 MELKKHQDQRVPERKGQKRKLEEEIEEGKREISAAEAAAAAPYGEARRVILNEVYTQVNILNSTFSWHETHRGAAKRATHILAELAKNEEVVNVIVEGGA VPALVKHLEAPPSSEIDHNNSKPFEHEVEKESAFALGLLAVKPEHQQIIVDAGALSHLVSLLKRQRDVHRDGSNSRAVNSVIRRAADAITNLAHENSSIK TRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECYALPTLILMLRSDDAAIHYEAVGVIGNLVHSSPNIKREVLAAGALQPVIGLL SSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYG LADNEDNVSDFISVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVAEKAVQRRVALALAHLCSPDDQRAIFIDNCGLDLLLGLLGS SSLKQQLDGAIALYRLANKATTLSPVDAAPPSPTPQVYLGEQYVNNPTLSDVTFLVEGRRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEV FELMMRFIYTGSVDVTLIIAQDLLRAADQYLLEGLKRLCEYTIAQDITLENIGSMYELSEAFHAISLRHRCILFILEQFDKLSDKPRHSQLIQRIIPEIR NYFEKALTNPHQHNSRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19330		ARIA	ARM repeat protein interacting...		Potri.008G150100 [exp]	0	1
AT5G19620		TOC75-V, EMB213...	translocon at the outer envelo...		Potri.003G204900 [exp]	2.44	0.8741
AT3G02050		ATKT4, ATKUP3, ...	K+ uptake transporter 3, ARABI...		Potri.014G144900 [exp]	5.83	0.8602	Pt-KUP3.1
AT4G22860			Cell cycle regulated microtubu...		Potri.001G114400 [exp]	8.30	0.8388
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Potri.015G076100 [exp]	12.00	0.8268
AT5G65685			UDP-Glycosyltransferase superf...		Potri.007G009600 [exp]	13.41	0.8337
AT5G49020		ATPRMT4A	ARABIDOPSIS THALIANA PROTEIN A...		Potri.008G222700 [exp]	15.00	0.7830
AT4G36290		CRT1	compromised recognition of TCV...		Potri.005G118400 [exp]	16.49	0.7502
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Potri.008G119500 [exp]	20.19	0.7948
AT5G17990		PAT1, TRP1	PHOSPHORIBOSYLANTHRANILATE TRA...		Potri.015G078801 [exp]	20.49	0.7867
AT1G73210			Protein of unknown function (D...		Potri.004G068700 [exp]	22.29	0.8198

Compare expression of checked genes

Potri.008G150100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.