Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05990 634 / 0 Leucine-rich repeat (LRR) family protein (.1) AT3G19230 449 / 7e-154 Leucine-rich repeat (LRR) family protein (.1) AT2G37050 208 / 3e-59 Leucine-rich repeat protein kinase family protein (.1.2.3) AT2G14440 192 / 1e-52 Leucine-rich repeat protein kinase family protein (.1) AT2G14510 180 / 1e-48 Leucine-rich repeat protein kinase family protein (.1) AT1G67720 175 / 8e-47 Leucine-rich repeat protein kinase family protein (.1) AT4G29180 165 / 2e-43 RHS16 root hair specific 16 (.1.2) AT4G29990 162 / 2e-42 Leucine-rich repeat transmembrane protein kinase protein (.1) AT2G28990 162 / 2e-42 Leucine-rich repeat protein kinase family protein (.1) AT5G59680 159 / 2e-41 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G090800 [exp] 825 / 0 AT3G05990 650 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.009G102300 [exp] 476 / 9e-165 AT3G19230 595 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.005G043700 [exp] 201 / 1e-57 AT3G46280 216 / 3e-63 protein kinase-related (.1) Potri.006G132100 [exp] 204 / 6e-57 AT2G37050 1317 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.016G084900 [exp] 203 / 2e-56 AT2G37050 1276 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.013G030800 [exp] 189 / 4e-53 AT2G19210 224 / 2e-63 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.010G052800 [exp] 190 / 5e-52 AT1G67720 1330 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G030100 [exp] 170 / 2e-46 AT1G05700 207 / 3e-58 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.008G181200 [exp] 172 / 8e-46 AT1G67720 1339 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002456 [exp] 607 / 0 AT3G05990 542 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10002405 [exp] 454 / 1e-155 AT3G19230 595 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10027903 [exp] 451 / 1e-154 AT3G19230 587 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10010528 [exp] 412 / 1e-141 AT3G19230 395 / 4e-135 Leucine-rich repeat (LRR) family protein (.1) Lus10015057 [exp] 190 / 5e-52 AT2G37050 1316 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10036935 [exp] 187 / 4e-51 AT1G67720 1303 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037051 [exp] 183 / 3e-49 AT1G67720 1293 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023166 [exp] 181 / 1e-48 AT2G37050 1323 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10013994 [exp] 157 / 2e-41 AT1G28340 908 / 0.0 receptor like protein 4 (.1) Lus10015417 [exp] 157 / 6e-41 AT1G28340 902 / 0.0 receptor like protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0202 [poplar] [flax] GBD PF12819 [poplar] [flax] Malectin_like Malectin-like domain
Representative CDS sequence Show only first row Show all	>Potri.008G150200.6 pacid=42808292 polypeptide=Potri.008G150200.6.p locus=Potri.008G150200 ID=Potri.008G150200.6.v4.1 annot-version=v4.1 ATGTCCCCTCCGTCACTCATCATCCTGATTTCTGTATTTTCTATCCTCTCCCTATCTACCTCCCAACCTCCACCTCTTCGCCGTACTTTAATTGATTGCG GTGCTACCGTGCCGTCAACAATCAACGGTCTTCAATGGATCCTAGACACTGGCTACATCACCGGTGGAACCGCAAAGAACCTAACAGTTCCAGTACTCAA TCACACTCTCTCCACCGTCCGATCATTTCCTCTGCAAAATAATCTCCGCCGCAAATTCTGCTACGTGGTCAATGTTTTCCGCGGAGCAAAGTACATGATC AGGTCAACTTACTTCTACGGAGGAATCAACGGCAATGATTCACCTCCTGTTTTCGATCAGATTGTTGATGGAACACTCTGGAGCGTGGTGAATACCACGG AGGATTATAGAGATGGCATGTCGTCTTACTACGAAGGTGTTTTCTTGGCTCGAGGGAAGACTATGAGTTTCTGTATTGCTGCAAATTCGTACACGGAATC TGACCCGTTTATTTCGGCCTTGGAGTTCGTGATTTTGGAAAATTCGTTGTACAATTCGACTGATTTTAAACAGGCTGGACTTAGCTTGGTTGCCAGGCAC AGTTTTGGCCACAATGAACGTATTCGATATCCTGATGATCAATTCGACCGAGTTTGGGAGCCATTTGGAGCAAATGATTCAACAATATCGAGTAGTAAAA ATGTGTCTGTTTCTACTATCTGGAATCTTCCTCCTACCAAGATATTTGAAACGGAATTGACAACAAGCCGGTCAAGTCCTCAGGAAATGAACTGGCCTCC AGTGCCACTTCCTAATTCAACATACTATATTGCTTTATACTTTGCACACGATCATAATTCCTCGCCAGGGGGTTCGAGGATTATTGATATAAGTATTAAT GGTGTACCGTATTATAAGAACATGACTGTGACGCCGGCTGGTGTTGTTATCTTTGCAAATAAGTGGCCTCTTGGTGGTCTTACGAAGGTTGCTTTGACTC CGGCTACTGGTTTGAGCATTGATCCGATGATTAACGGTGGAGAGGTGTTTGATGTGATTGCACTTGGAGGAAGAACACTTACAAGAGATGTAATAGCTCT GGAAGCACTGAAAAGCAGTTTCCAGAATACTCCACATGATTGGAACGGTGATCCCTGTATGCCACGTCAGTTTTCATGGACTGGGATTGCATGCTCTGAA GGCCCCCGGATTCGAGTAGTTACTTTGAACCTGACAAGCATGGGTCTTTCAGGATCACTTCCACTTAGTATTGCCAGATTGACTGCATTGACTGGCATCT GGCTCGGGAACAACACTTTATCAGGATCAATACCTGATTTCAGTTCATTAAAGATGCTGGAGACATTGCATTTGGAAGACAACCAATTCACTGGCGAGAT CCCTTTGTCACTTGGAAACATCAAGGATCTTCGAGAACTGTTCTTACAGAACAATAATCTGACTGGCCAAATCCCAAATAATCTTATTGGGAAACCTGGA CTGAATCTTAGGACTTCTGGAAATCAGTTCTTGTCCCCGTCTCCTTCTTAA
AA sequence Show only first row Show all	>Potri.008G150200.6 pacid=42808292 polypeptide=Potri.008G150200.6.p locus=Potri.008G150200 ID=Potri.008G150200.6.v4.1 annot-version=v4.1 MSPPSLIILISVFSILSLSTSQPPPLRRTLIDCGATVPSTINGLQWILDTGYITGGTAKNLTVPVLNHTLSTVRSFPLQNNLRRKFCYVVNVFRGAKYMI RSTYFYGGINGNDSPPVFDQIVDGTLWSVVNTTEDYRDGMSSYYEGVFLARGKTMSFCIAANSYTESDPFISALEFVILENSLYNSTDFKQAGLSLVARH SFGHNERIRYPDDQFDRVWEPFGANDSTISSSKNVSVSTIWNLPPTKIFETELTTSRSSPQEMNWPPVPLPNSTYYIALYFAHDHNSSPGGSRIIDISIN GVPYYKNMTVTPAGVVIFANKWPLGGLTKVALTPATGLSIDPMINGGEVFDVIALGGRTLTRDVIALEALKSSFQNTPHDWNGDPCMPRQFSWTGIACSE GPRIRVVTLNLTSMGLSGSLPLSIARLTALTGIWLGNNTLSGSIPDFSSLKMLETLHLEDNQFTGEIPLSLGNIKDLRELFLQNNNLTGQIPNNLIGKPG LNLRTSGNQFLSPSPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05990			Leucine-rich repeat (LRR) fami...		Potri.008G150200 [exp]	0	1
AT3G02430			Protein of unknown function (D...		Potri.003G008600 [exp]	2.00	0.7526
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Potri.009G164300 [exp]	3.74	0.7797
AT5G06440			unknown protein		Potri.006G201000 [exp]	18.16	0.7052
AT5G06560			Protein of unknown function, D...		Potri.016G065200 [exp]	18.65	0.7072
AT4G40070			RING/U-box superfamily protein...		Potri.008G025300 [exp]	18.70	0.6675
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Potri.006G169700 [exp]	22.44	0.6984
AT3G07570			Cytochrome b561/ferric reducta...		Potri.014G197500 [exp]	29.66	0.6717
AT1G72470		ATEXO70D1	exocyst subunit exo70 family p...		Potri.001G166400 [exp]	30.85	0.6840
AT1G08800			Protein of unknown function, D...		Potri.019G012200 [exp]	35.32	0.6372
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Potri.005G082000 [exp]	36.48	0.6878	STGA1.3

Compare expression of checked genes

Potri.008G150200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.