Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19600 228 / 6e-70 CYCT1;4 Cyclin family protein (.1) AT5G45190 224 / 4e-68 Cyclin family protein (.1.2) AT4G19560 192 / 6e-57 CYCT1;2 Cyclin family protein (.1) AT1G27630 171 / 4e-50 CYCT1;3 cyclin T 1;3 (.1) AT1G35440 136 / 1e-37 CYCT1;1 cyclin T1;1 (.1) AT2G26430 99 / 1e-22 ATRCY1, RCY1 arginine-rich cyclin 1 (.1.2.3) AT5G48630 56 / 7e-09 Cyclin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G090400 [exp] 541 / 0 AT4G19600 171 / 1e-48 Cyclin family protein (.1) Potri.003G148800 [exp] 229 / 1e-69 AT5G45190 635 / 0.0 Cyclin family protein (.1.2) Potri.005G097400 [exp] 228 / 7e-69 AT5G45190 550 / 0.0 Cyclin family protein (.1.2) Potri.007G067100 [exp] 224 / 2e-67 AT5G45190 564 / 0.0 Cyclin family protein (.1.2) Potri.001G081600 [exp] 209 / 6e-62 AT5G45190 636 / 0.0 Cyclin family protein (.1.2) Potri.002G032300 [exp] 176 / 5e-51 AT5G45190 333 / 6e-109 Cyclin family protein (.1.2) Potri.008G043600 [exp] 107 / 2e-25 AT2G26430 475 / 1e-166 arginine-rich cyclin 1 (.1.2.3) Potri.010G090301 [exp] 81 / 4e-19 AT4G19600 50 / 1e-08 Cyclin family protein (.1) Potri.002G246800 [exp] 55 / 2e-08 AT5G48630 382 / 6e-136 Cyclin family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021927 [exp] 445 / 1e-155 AT5G45190 246 / 2e-75 Cyclin family protein (.1.2) Lus10041213 [exp] 358 / 3e-122 AT5G45190 173 / 4e-49 Cyclin family protein (.1.2) Lus10040640 [exp] 211 / 4e-63 AT5G45190 587 / 0.0 Cyclin family protein (.1.2) Lus10036192 [exp] 127 / 1e-32 AT5G45190 483 / 5e-167 Cyclin family protein (.1.2) Lus10038329 [exp] 125 / 1e-31 AT5G45190 483 / 3e-167 Cyclin family protein (.1.2) Lus10041418 [exp] 100 / 5e-23 AT2G26430 475 / 2e-163 arginine-rich cyclin 1 (.1.2.3) Lus10036191 [exp] 61 / 7e-12 AT5G45190 109 / 1e-29 Cyclin family protein (.1.2) Lus10003151 [exp] 61 / 3e-10 AT5G48630 402 / 2e-143 Cyclin family protein (.1.2) Lus10002354 [exp] 61 / 3e-10 AT5G48630 397 / 2e-141 Cyclin family protein (.1.2) Lus10036509 [exp] 59 / 2e-09 AT2G26430 411 / 2e-143 arginine-rich cyclin 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [poplar] [flax] Cyclin PF00134 [poplar] [flax] Cyclin_N Cyclin, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.008G150500.1 pacid=42807737 polypeptide=Potri.008G150500.1.p locus=Potri.008G150500 ID=Potri.008G150500.1.v4.1 annot-version=v4.1 ATGTCCTTTGCACGGAATCATCGTTCACACGGAGGAACGGGCCATGATGATCGCTGGAACTCTTTGAATGGGTACAATTTCAACCATGGAAATAGGAACA TTGATGCGAATAGGAACACCAACTACAGCTACAATTGGAATCATAGCAATATCCGAGACTACTCCTCGGGGAAATTCAGGGACCATGTTAATGGTTATGC TAACCCTCCCAGCGGTGCACCAGCTTTTAAAAGGAGAAAATTTAGTGCGGATACTTGGGGAGATGGTGGGAGACACTATCCTCAATACAATGCATATGAA TATGCCGATCTATCTTACAACAATTCAGTCCCTTTGCCAACTAGATCCAATGATGAGGTCTCTACATCTATAAGTTGCAAACGTGATTGTTCAAAACTGG AAGAAGATGAACCAGTATTCTTGTCAAAGGATGAGATTGAAAGACACTCCCCATCTAGAAAAGATGGAATTGATGCACTACGTGAAACGCATCTGCGGTA TTCTTATTGTGCTTTCCTTCAGAACCTCGGACTGCGGTTGGAGCTGCCGCAAACTACTATTGGCACTGGCATGGTTTTGTGCCACCGTTTCTTTGTTCGA CGATCACATGCATGCCATGATAGATATTTAATTGCTGTTGCTGCACTTTTTCTCGCTGCAAAGTCTGAGGAGACGCCACGCCCTTTGAATAATGTCGTGA GAGTTTCTTGTGAGATTTTCCACAAGCAGGATATTACTTTCTTGTCATACCTGCTCCCTGTTGACTGGTTTGAACAGTACCGGGAGCGAGTGATCGAGGC TGAGCAAATGATTCTGACAACCCTAAATTTTGAAATCAATGTGCAGCATCCATATGGTCCTCTGACAACCATCCTTGACAAATTAGGTCTTTCACAAACT GTTTTGGTGAATCTGGCTCAAAACTTGGTCGGTGAAGGGCTCCGGAGCTCATTGTGGCTTCAGTTTAAGCCCCATCACATTGCCGCTGGTGCTGCCTTTC TTGCTGCCAAGTTTTTAAACTTTGATCTTGCTTTTTACCAGAATATCTGGCGGGAGTTTGAAACAACACCAGCTATTCTCCAAGATGTATCGCAGCAGCT GATGGAGCTTTTCCAGTAA
AA sequence Show only first row Show all	>Potri.008G150500.1 pacid=42807737 polypeptide=Potri.008G150500.1.p locus=Potri.008G150500 ID=Potri.008G150500.1.v4.1 annot-version=v4.1 MSFARNHRSHGGTGHDDRWNSLNGYNFNHGNRNIDANRNTNYSYNWNHSNIRDYSSGKFRDHVNGYANPPSGAPAFKRRKFSADTWGDGGRHYPQYNAYE YADLSYNNSVPLPTRSNDEVSTSISCKRDCSKLEEDEPVFLSKDEIERHSPSRKDGIDALRETHLRYSYCAFLQNLGLRLELPQTTIGTGMVLCHRFFVR RSHACHDRYLIAVAALFLAAKSEETPRPLNNVVRVSCEIFHKQDITFLSYLLPVDWFEQYRERVIEAEQMILTTLNFEINVQHPYGPLTTILDKLGLSQT VLVNLAQNLVGEGLRSSLWLQFKPHHIAAGAAFLAAKFLNFDLAFYQNIWREFETTPAILQDVSQQLMELFQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19600		CYCT1;4	Cyclin family protein (.1)		Potri.008G150500 [exp]	0	1
AT5G08110			nucleic acid binding;ATP-depen...		Potri.012G063500 [exp]	2.44	0.8183
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Potri.010G174900 [exp]	3.46	0.8172
AT1G70650			Ran BP2/NZF zinc finger-like s...		Potri.010G107400 [exp]	4.24	0.8180
AT1G04390			BTB/POZ domain-containing prot...		Potri.001G457550 [exp]	4.89	0.7936
AT4G39370		UBP27	ubiquitin-specific protease 27...		Potri.007G077100 [exp]	6.32	0.7992	Pt-UBP27.1
AT5G51180			alpha/beta-Hydrolases superfam...		Potri.001G079400 [exp]	13.22	0.7769
AT4G19160			unknown protein		Potri.003G033300 [exp]	13.56	0.8025
AT1G08620		PKDM7D	Transcription factor jumonji (...		Potri.002G037300 [exp]	17.60	0.8120
AT5G47800			Phototropic-responsive NPH3 fa...		Potri.016G003700 [exp]	23.06	0.7672
AT1G49180			protein kinase family protein ...		Potri.019G007200 [exp]	23.66	0.7651

Compare expression of checked genes

Potri.008G150500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.