Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26250 724 / 0 Major facilitator superfamily protein (.1) AT3G05960 711 / 0 ATSTP6 sugar transporter 6 (.1) AT5G26340 615 / 0 ATSTP13, MSS1, STP13 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) AT3G19940 555 / 0 Major facilitator superfamily protein (.1) AT4G02050 549 / 0 STP7 sugar transporter protein 7 (.1) AT1G07340 547 / 0 ATSTP2 sugar transporter 2 (.1) AT1G50310 538 / 0 ATSTP9 sugar transporter 9 (.1) AT5G23270 533 / 0 ATSTP11, STP11 sugar transporter 11 (.1) AT4G21480 528 / 0 STP12 sugar transporter protein 12 (.1) AT1G11260 519 / 0 ATSTP1, STP1 sugar transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G150700 [exp] 1046 / 0 AT5G26250 725 / 0.0 Major facilitator superfamily protein (.1) Potri.001G248900 [exp] 687 / 0 AT5G26250 652 / 0.0 Major facilitator superfamily protein (.1) Potri.010G090000 [exp] 678 / 0 AT5G26250 664 / 0.0 Major facilitator superfamily protein (.1) Potri.009G042900 [exp] 619 / 0 AT5G26250 577 / 0.0 Major facilitator superfamily protein (.1) Potri.008G151100 [exp] 614 / 0 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Potri.010G089800 [exp] 598 / 0 AT5G26340 836 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Potri.018G113300 [exp] 544 / 0 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1) Potri.006G189100 [exp] 537 / 0 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1) Potri.005G090700 [exp] 527 / 0 AT3G19940 710 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002452 [exp] 677 / 0 AT5G26250 655 / 0.0 Major facilitator superfamily protein (.1) Lus10021926 [exp] 643 / 0 AT5G26250 656 / 0.0 Major facilitator superfamily protein (.1) Lus10002450 [exp] 617 / 0 AT5G26340 905 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10010534 [exp] 617 / 0 AT5G26340 902 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10010532 [exp] 614 / 0 AT5G26250 588 / 0.0 Major facilitator superfamily protein (.1) Lus10005870 [exp] 606 / 0 AT5G26250 601 / 0.0 Major facilitator superfamily protein (.1) Lus10021924 [exp] 602 / 0 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10013441 [exp] 546 / 0 AT1G50310 731 / 0.0 sugar transporter 9 (.1) Lus10018422 [exp] 529 / 0 AT1G11260 835 / 0.0 sugar transporter 1 (.1) Lus10002597 [exp] 504 / 9e-176 AT1G11260 798 / 0.0 sugar transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.008G150800.3 pacid=42808027 polypeptide=Potri.008G150800.3.p locus=Potri.008G150800 ID=Potri.008G150800.3.v4.1 annot-version=v4.1 ATGCCGGCTGTTGTGATCGCTAACAATGGCGACGTGCCAGAGTTTGAAGGCAGGATAACATTTAATGTCATCGTATGTGTGGTGATTGCGGCTTGTGGAG GTTTAATGTTCGGCTACGACATTGGAGTTTCAGGTGGTGTCACAGCCATGGATGATTTCTTGAAGAAATTCTTTTATCAAGTATGGGAAAGGAAGCAACA GGCTCATGAAAATAATTACTGTAAATATGACAATAAAAAACTGCAATTGTTCACATCGTCCCTGTACATAGCGGCTCTCATAGCCAGCTTTCTCGCTTCA AAGACGTGCTCAAAGTTTGGCCGAAAGCCAACTATGCAGCTTGCATCTCTTTTCTTCATCGGTGGCGTTGCTCTAACAACATTTGCTGTAAATATTGAAA TGCTGATCATTGGGAGACTTCTTCTTGGTTGTGGAGTGGGATTCGCCAATCAGGCAGTACCGTTGTTTCTATCAGAGTTAGCTCCAGCAAAGATCCGTGG AGCACTTAACATTAGCTTCCAACTCTTCATTACAATCGGGATCTTGATTGCTAATATCGTCAACTATGTAGTCGGTAAGATTCATCCCTACGGATTTAGA ATTTCACTTGGAATTGCTGGTGTACCAGCTCTACTGCTATGCTTTGGTTCGCTTGCCATTTATGAGACTCCAACTAGCCTTATTGAGCGCAAGAAAGTAG AGCAAGGAAGGGCAGTGCTTAAAAAGATCAGGGGTGTAGATAATGTAGATCTTGAGTATGATTCGATCGTGCATGCTTGCGAGGTGGCTAGCCAAATTAC CCAACCCTACCATGAACTCATGAAGAGAGAAAGCAGACCACCGCTAGTGATAGCCATCGTGATGCAAGTGTTCCAGCAATTCACCGGCATCAATGCCATT ATGTTCTACGCACCTGTTCTCTTTCAGACAGTCGGATTTGGGAGTGATGCTGCATTGCTTTCTTCTGTCGTAACTGGCCTTGTCAATGTTCTGAGCACCA TAGTTTCGGTAGTCCTCGTTGACAAGGTCGGTAGGAGGGCGTTGCTGCTTGAAGCTTGTGTACAGATGCTTATTACCCAGTGTATCATTGGAGGTGTTCT GATGAAAGATTTGAAGACAACCGGCACCCTACCCAACGGAGATGCATTGGTGGTGGTGATAATGGTATGCGTCTTTGTTGCTGGGTTTGCATGGTCATGG GGTCCTCTTGGTTGGTTAATTCCAAGCGAGACCTTCCCTCTTGAGACCAGAACAGCCGGGTTTTCCTTCGCAGTCAGCTCCAACATGCTTTTCACCTTTG TGATTGCACAAGCATTCTTGTCCATGCTATGCAATTTGAGAGCGGGGATTTTCTTCTTCTTTGCTGCATGGATTGTGGTTATGGGACTGTTTGCACTATT TTTGCTCCCAGAGACAAAGGGCGTTCCTATTGACGAGATGGTTGACAGAGTCTGGAAGCAGCATTGGTTCTGGAAGAGATTCTTCAATGATGAACAAGTG GTGGAAAAAGGAGCAATTGAGATGATCCACCCACATTTGACCTAA
AA sequence Show only first row Show all	>Potri.008G150800.3 pacid=42808027 polypeptide=Potri.008G150800.3.p locus=Potri.008G150800 ID=Potri.008G150800.3.v4.1 annot-version=v4.1 MPAVVIANNGDVPEFEGRITFNVIVCVVIAACGGLMFGYDIGVSGGVTAMDDFLKKFFYQVWERKQQAHENNYCKYDNKKLQLFTSSLYIAALIASFLAS KTCSKFGRKPTMQLASLFFIGGVALTTFAVNIEMLIIGRLLLGCGVGFANQAVPLFLSELAPAKIRGALNISFQLFITIGILIANIVNYVVGKIHPYGFR ISLGIAGVPALLLCFGSLAIYETPTSLIERKKVEQGRAVLKKIRGVDNVDLEYDSIVHACEVASQITQPYHELMKRESRPPLVIAIVMQVFQQFTGINAI MFYAPVLFQTVGFGSDAALLSSVVTGLVNVLSTIVSVVLVDKVGRRALLLEACVQMLITQCIIGGVLMKDLKTTGTLPNGDALVVVIMVCVFVAGFAWSW GPLGWLIPSETFPLETRTAGFSFAVSSNMLFTFVIAQAFLSMLCNLRAGIFFFFAAWIVVMGLFALFLLPETKGVPIDEMVDRVWKQHWFWKRFFNDEQV VEKGAIEMIHPHLT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G26250			Major facilitator superfamily ...		Potri.008G150800 [exp]	0	1
AT5G26250			Major facilitator superfamily ...		Potri.008G150700 [exp]	1.00	0.9410
AT3G09110			Protein of unknown function (D...		Potri.010G210500 [exp]	5.19	0.8971
AT4G32770		ATSDX1, VTE1	tocopherol cyclase, chloroplas...		Potri.006G240100 [exp]	5.65	0.8653
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Potri.001G023900 [exp]	9.59	0.8962
AT4G04880			adenosine/AMP deaminase family...		Potri.011G000100 [exp]	14.07	0.8622
AT4G27220			NB-ARC domain-containing disea...		Potri.005G041101 [exp]	19.36	0.8659
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Potri.003G216651 [exp]	23.81	0.8805
					Potri.010G210600 [exp]	30.16	0.8305
AT3G10140		RECA3	RECA homolog 3 (.1)		Potri.016G057700 [exp]	31.96	0.8261
AT4G10780			LRR and NB-ARC domains-contain...		Potri.017G035300 [exp]	34.30	0.8752

Compare expression of checked genes

Potri.008G150800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.