Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22380 639 / 0 TIC time for coffee (.1.2) AT3G63180 92 / 3e-18 ATTKL TICKLE, TIC-like (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G089700 [exp] 1725 / 0 AT3G22380 657 / 0.0 time for coffee (.1.2) Potri.002G052300 [exp] 378 / 4e-109 AT3G22380 219 / 2e-57 time for coffee (.1.2) Potri.005G210200 [exp] 333 / 4e-94 AT3G22380 290 / 6e-80 time for coffee (.1.2) Potri.003G029500 [exp] 217 / 1e-63 AT3G22380 81 / 3e-17 time for coffee (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010535 [exp] 881 / 0 AT3G22380 766 / 0.0 time for coffee (.1.2) Lus10002448 [exp] 541 / 8e-172 AT3G22380 520 / 9e-165 time for coffee (.1.2) Lus10002447 [exp] 171 / 1e-45 AT3G22380 110 / 9e-26 time for coffee (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G151200.9 pacid=42808165 polypeptide=Potri.008G151200.9.p locus=Potri.008G151200 ID=Potri.008G151200.9.v4.1 annot-version=v4.1 ATGGATAGAAACAGAGAAGCAAGAAGAGTGAGTTTGGCGGCTAGTAATGGCTTGTCTAGAAGAAGACATAGAAGTAGCAGTCTAAGAGACTCTCCAGAAG ATGATGGACCAGTGGAGTTGCAAGAAACAACGAGGCTACGAGATCGGAAAAAAGATCGAGATCGGGACAGAGATAGGGACCGAGACCGTGAAAAAGACCG AGAGAGAGACCGGATTAGCGGCAGGAGTAAAAGACGGAGAGGGGAGAGATTGATGCACGGGAGTAACAGAGAAGATGGAGAGCGAGACGATAGCTCAGAC GAAGAGAGCGTTAACGATGACGAATATGAAGATGACGATGACGCAGTTGGTGTTGCTGGGAGTTCCATGAGGATGCTCCCACCGAATCCTTCTTCTTTAT CTTCTTCTTCTATGTCTAATCATCATCATCGGAAGAGCTTTCCTCCGCCGGCCAAAGTTTTTAGAACCGCGCCGACGACGATAAATACCACGGCAGCAGT AACACCGTGGAAGGCTCCTGATGAAATGATTGGCGTGTCGGTGCCTAGAAAAGCTCGGTCAGCATCCACTAAGAGGTCACATGAATGTTGGGTTTCAAGT GGTGGCGGAGTTGGTAGTGAGCAAACTCACCGGCAAGCTTCGACATCTCCGGTAAGATCGAGTGGACCAGCTATGCTGGCTTCAATTTCAGCTTCTCCGG CTGCTCCCGCATCCCCTCCATCATCTTCTAATGCTTCAGTAAAAAAGAAGATGAAGCCAAATGGACCGAAACAGAAACCACCTAAATCTTCTTCGAAACC CAACTCTTCAGCACAAGATGAGATTGAGTTTGAGATTGCTGAGGTGTTGTATGGATTGTTGAGGCAACCACAAGCACCTTCAAAGCAAGAAATAGTGGGA AATGATTCGACAAAGTTTGATTCCAGAGAAAATCATAATAAGTCTACTAGTGATGCTAAATCCAGAGTTTCCTCGCCGATCTCTAACTCACAGTCAACTG TTCCTCAGTCATCTTCAATTCCTCAATCTAATTCTAGCTCCTCTGCTGCTCCTATGTCTGCAATTGCACCGAAGAGGAAGAGACCGCGACCAGTAAAGTA TGAAGATGAGCATCCTGCTAATTTTCCTGCTCGCAATAGTTCCATTTTGTCAACGGCCAAGATTGACATTGATCAGCCTGCAAAAAATGAATCTTCTCCT AATATAGAGAAGAATTTGGGATCTGCAGCTGAAAATGGTGGAGTTTCATGTGATTTACTGGCCAATCAAGCTGCTCCGGCGACAACAGAGGCGCAGCTGC AGGAGGTTGTTAAGCCGGAGAATCATCCGTCATCGGATTCCAAGCCCATGACTGAAGAATCAGAATGTAGAGATTTGGGTGAACCTAAAGAAGAGCCTAG GTCTCCTATGAAGGAATCCACTCCTGGCCTTAGATTTGATGATGGTTCCGAGAGTTTGACAGCAAATAAAGCGAATGTGATGGCCTCTGAGATTGATAGC CAGCGAGAAGAAAAGTTCCAGATCGATCTGATGTTGCAGGCTCCTCCTCCATCAAGATCATCTCCAGAAAGGGACATTGAGATTGATTTTGTGGCTGTAG ATCCTAAATCTATGGTCACAAATGGGGAAACGGAAAAGAAGCCTATGATGGTCAAAGAAGACGAGAAAGCATTAAAAACTGGGAAGGAAAATATGAATGT GGAACCTGAAGAGAAAAGGACAAAAGTTACAGGAGAAGAAGTTGAATCCCAGAAGCCTATTGTTAATGAAGAGAGGAATATTGATCTCCAGCTGGATTTA GAGAAGGCTGATAGAGATAGTGCTACTGTTACTGCAAGTAGAAACAAGCTACTTCAGCATGTCCAGAAGCAGCAGCAACCCAACATAGAGAAAATTGCTC CTCAATCTAGTTCTTTGCCTTTGCCAATGTCTATGACTAGCTGGCCTGGTGGGCTTCCTCACATGGGATATATGGCACCTCTACAAGGAGTTGTTTCCAT GGATGGAAGTGCCGTGTCTTCTGCAGCCTTACAGCCTCCACATTTGATTTTTAGCCAACCACGGCCAAAAAGGTGTGCAACACATTGCTACATTGCAAGG AATATTCTTTGTCACCAGCAAATTATTAGGATGAATCCTTTCTGGCCACCAGCAGGGGCTCCTGCTTTACAGTATGGGGCTAAAGCGAGCAATATGAATG TGGTGCCCTCCACCGATTTGCATGCAGTTAGAGGTGGGAATTCTGTAGAGAAGGGGCAGGGTCTTGCCATCTTTCCAGGTCCCGCTGGGAAGGACAAGAA TTCTCAAGCTGCTAACAGTGTAGACGCTGCACAGAGAAAGCAGATTTTGCTTCAGCAAGCCTTGCCCCCTGGTGCTCACAGTAATATTTTGCATGGACCC ACTTTTATCTTCCCAATGAATCAACAACAAGCTGCTGCTGCAGCAGCAGCTTCTGTCCGACCAGGCAGTGTGAAGTCTTCTCCTGCTGCTGGCAGTGTAG CTTCCTCAAGTAGCTCAAGTTCTGCTTCAATAAGTGCCACGGCACCAGCAGTAGCTGGTGCTACAGCAATGAGCTTCAACTACCCAAACTTCCCAGGCAA TGAAACTCAATACTTGGCAATTTTGCAGAATGGTGCATACCCGATTCCAATCCCTGCACATGTTGGGCCCACAACAGCTTATAGAGGAACCCATCCTCAG GCTATGCCTTTGTTTAATGGATCATTTTATTCTTCTCGAATGGTTCATCCTTCACAGCTTCAGCAACAGCAACAACCATCCACACAGACACAACAAAGCC AACAAGGTCATCAAAATCCAAGTATTTCTAGTGGTTCCTCGTCATCCCAGAAGCATTTGCAGAATCAGCAGCATAAACCACATGGGAGTGCAGGTAGTGG AAATTTGCAAGGTTTTCCTTGCCCTAAAAACCAGCCGCCTCAATCCCTGCCAAACCATCAGCGGCAGCTGATGCAAAATCAAAATGTTACTCACCAAGCC CGTCAACTTGAGAGTGAATTAGGTGGTGAAGACAGTCCATCAACTGCTGACAGTCGAGTTTCCCGTGCAAACATGAGTATTTATGGCCAGAATTTAATGC CAATACATCCCGCAAACTTTGCTTTGATGAATCCCCCACCAATGGGTAGTGCCCATAGTGCAAGTGGGAATACTGGTGAAAAGAAATCGCAGCAGCCACA AACACAGGCTTCAAAGGCTGGGGTTGAGCCTTTGGCATCTCAGACTTTTGCAATGTCATTTGCTCCCATCAACGGAACCACAGCTTCCCCAGGTCTTGAT ATTTCATCACTTGCACAGAATCATGCTCTTCTCCAAAGCCTCCCAGAGGCAGCAAGGCATGGCTATCATCACTTCATTGCTGCGGCCCAAGCAACACAGC AGAAGAATTACCGTGTTTCTGAAGAAGGGAATAGCGGAGGAAATGACACTTCAAATGTGGAAGAAGAGAGGAAGGCCATGGCAGGAGGAAAGACTCCATT ATCTGCTGGGCAGTCAATTGTGTTCTCTCGGCCAGATTTAACAGACTCCCCTGTTTCAACAATGCCTGTCAACAATGTTGTTGATAGCTCAGCCAGAAAT CTTAACCTTGGGTCCGCTCCTGCTCGGACCTCTGGCTCTTTTATGTCAGCTACTATTGGCACTGGAAATGCACCAAGTATGCAGCAGCAGATGCAGCGGA ATCATCATCAGCAGCAGCAGTGGAATCAGCAAATCTTTCAGTTTCAGAAGCAGCAACAATTTGCAGCTGCAGCTGCAGCTTCCACTCGTAGTAAAACACC AGCAACTAGTAATGGAAGTGTTTATTCAGACCACATTTCATCATCATCATCTGCGGCCACCAAGTTCCCTAATGCACTTTCTGCATTTCCTCAAAATCTT GTTCAAAGCAGCAGTAGTCCAGCTCAATCTCCTCAGTGGAAAAGTTCTGCGAGGACCACAACCTCTCAAGTTCCTTCTTCGTCCCTAACCTCATCTTCAT CGACCCTCAAAAACCTTCCTCAACAGCAAGGCCGAACCCAACAAAGTAACTCACACATATCTTTTGCAGCTAACCAAAAATCATCTGCTTCTCCTCAAGG GCAACCGAATCCTAGTAGTAACCAATCATCATCTCCTCCATTGGTGGTTGGTTCCCCAACAACATCAATTTCTAAGAGTGCAGGTGGAAGTCCAAGGACA TCCACTTCCACAAGTAACAAAGGTGGCCAATCATCTCAGCAATCCAAGAACTCTGCCTCAGTGCCCGTGCAAAAATCGTCTCCAGTTGGTGGAAGAAATA TTCCATCAATCCTTGGTTATCCTCACAACTCTTCTTCATCTAACCCTGGTGCAAAGCCTCAACTGTCACATCAGCAGCAGCAGCACTTAACAAAGCATGC ACTGCCGCAGGCTCAGCTAATCTACACTAATGCTTTTATGCAAGTTCAAGCTCAACATGTGGCAAATTCAACAAATGTTGCATCAGCAGCTAGTGGGTTT TATCTGCAAAGACACCGCAGTGAGCAGCAGCCGCAACCACATGGGGCACCAGCAACCTCTTCTACAGGGATGTTGAATTTATGTCATCCAGTCACGCTTG CCAACACCAGCACAACTGATCCTGCAAAGGCAGTTGCTGCAGCTTCTAACAATATGAAAGGTGGTGGCTTACCTCCACAGGGTCTTATCCATGCTCAATT TGCTGCTGTCCAGCCCTCTGGAAAGCCGCACCAGATCTTACCTGCTGGCTTCCATTATGTCCATCCTGTTCCCACTGCAGTTCAGGTGAAACCAGCAGAG CAGAAACAACCTGCTGGCGAATAG
AA sequence Show only first row Show all	>Potri.008G151200.9 pacid=42808165 polypeptide=Potri.008G151200.9.p locus=Potri.008G151200 ID=Potri.008G151200.9.v4.1 annot-version=v4.1 MDRNREARRVSLAASNGLSRRRHRSSSLRDSPEDDGPVELQETTRLRDRKKDRDRDRDRDRDREKDRERDRISGRSKRRRGERLMHGSNREDGERDDSSD EESVNDDEYEDDDDAVGVAGSSMRMLPPNPSSLSSSSMSNHHHRKSFPPPAKVFRTAPTTINTTAAVTPWKAPDEMIGVSVPRKARSASTKRSHECWVSS GGGVGSEQTHRQASTSPVRSSGPAMLASISASPAAPASPPSSSNASVKKKMKPNGPKQKPPKSSSKPNSSAQDEIEFEIAEVLYGLLRQPQAPSKQEIVG NDSTKFDSRENHNKSTSDAKSRVSSPISNSQSTVPQSSSIPQSNSSSSAAPMSAIAPKRKRPRPVKYEDEHPANFPARNSSILSTAKIDIDQPAKNESSP NIEKNLGSAAENGGVSCDLLANQAAPATTEAQLQEVVKPENHPSSDSKPMTEESECRDLGEPKEEPRSPMKESTPGLRFDDGSESLTANKANVMASEIDS QREEKFQIDLMLQAPPPSRSSPERDIEIDFVAVDPKSMVTNGETEKKPMMVKEDEKALKTGKENMNVEPEEKRTKVTGEEVESQKPIVNEERNIDLQLDL EKADRDSATVTASRNKLLQHVQKQQQPNIEKIAPQSSSLPLPMSMTSWPGGLPHMGYMAPLQGVVSMDGSAVSSAALQPPHLIFSQPRPKRCATHCYIAR NILCHQQIIRMNPFWPPAGAPALQYGAKASNMNVVPSTDLHAVRGGNSVEKGQGLAIFPGPAGKDKNSQAANSVDAAQRKQILLQQALPPGAHSNILHGP TFIFPMNQQQAAAAAAASVRPGSVKSSPAAGSVASSSSSSSASISATAPAVAGATAMSFNYPNFPGNETQYLAILQNGAYPIPIPAHVGPTTAYRGTHPQ AMPLFNGSFYSSRMVHPSQLQQQQQPSTQTQQSQQGHQNPSISSGSSSSQKHLQNQQHKPHGSAGSGNLQGFPCPKNQPPQSLPNHQRQLMQNQNVTHQA RQLESELGGEDSPSTADSRVSRANMSIYGQNLMPIHPANFALMNPPPMGSAHSASGNTGEKKSQQPQTQASKAGVEPLASQTFAMSFAPINGTTASPGLD ISSLAQNHALLQSLPEAARHGYHHFIAAAQATQQKNYRVSEEGNSGGNDTSNVEEERKAMAGGKTPLSAGQSIVFSRPDLTDSPVSTMPVNNVVDSSARN LNLGSAPARTSGSFMSATIGTGNAPSMQQQMQRNHHQQQQWNQQIFQFQKQQQFAAAAAASTRSKTPATSNGSVYSDHISSSSSAATKFPNALSAFPQNL VQSSSSPAQSPQWKSSARTTTSQVPSSSLTSSSSTLKNLPQQQGRTQQSNSHISFAANQKSSASPQGQPNPSSNQSSSPPLVVGSPTTSISKSAGGSPRT STSTSNKGGQSSQQSKNSASVPVQKSSPVGGRNIPSILGYPHNSSSSNPGAKPQLSHQQQQHLTKHALPQAQLIYTNAFMQVQAQHVANSTNVASAASGF YLQRHRSEQQPQPHGAPATSSTGMLNLCHPVTLANTSTTDPAKAVAAASNNMKGGGLPPQGLIHAQFAAVQPSGKPHQILPAGFHYVHPVPTAVQVKPAE QKQPAGE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22380		TIC	time for coffee (.1.2)		Potri.008G151200 [exp]	0	1
AT3G22380		TIC	time for coffee (.1.2)		Potri.002G052300 [exp]	1.73	0.8845
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Potri.002G160900 [exp]	2.44	0.9002
AT2G27170		SMC3, TTN7	TITAN7, STRUCTURAL MAINTENANCE...		Potri.009G155200 [exp]	5.83	0.8865	TTN8.2
AT2G45460	FHA		SMAD/FHA domain-containing pro...		Potri.014G071400 [exp]	7.21	0.8794
AT5G57710			Double Clp-N motif-containing ...		Potri.018G097300 [exp]	7.93	0.8016
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Potri.010G170400 [exp]	8.66	0.8689
AT3G22380		TIC	time for coffee (.1.2)		Potri.010G089700 [exp]	12.96	0.8634
AT3G44530		HIRA	homolog of histone chaperone H...		Potri.009G144800 [exp]	13.07	0.8552
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Potri.005G237500 [exp]	18.97	0.8335	Pt-XRN2.2
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Potri.016G069100 [exp]	23.02	0.8529

Compare expression of checked genes

Potri.008G151200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.