Plant FIBer expression Database

Potri.008G151300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G14950 611 / 0 KMS1 Killing Me Slowly 1, SNARE associated Golgi protein family (.1.2.3)
AT1G05360 598 / 0 KMS2 Killing Me Slowly 2, unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G089600
[exp]
772 / 0 AT4G14950 617 / 0.0 Killing Me Slowly 1, SNARE associated Golgi protein family (.1.2.3)
Potri.013G021700
[exp]
554 / 0 AT4G14950 545 / 0.0 Killing Me Slowly 1, SNARE associated Golgi protein family (.1.2.3)
Potri.005G032200
[exp]
553 / 0 AT4G14950 543 / 0.0 Killing Me Slowly 1, SNARE associated Golgi protein family (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010536
[exp]
653 / 0 AT4G14950 589 / 0.0 Killing Me Slowly 1, SNARE associated Golgi protein family (.1.2.3)
Lus10004916
[exp]
640 / 0 AT4G14950 589 / 0.0 Killing Me Slowly 1, SNARE associated Golgi protein family (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09335 SNARE_assoc SNARE associated Golgi protein
Representative CDS sequence
>Potri.008G151300.1 pacid=42808679 polypeptide=Potri.008G151300.1.p locus=Potri.008G151300 ID=Potri.008G151300.1.v4.1 annot-version=v4.1
ATGGTAATGGGGTCTGGCAAAAGAGCAAGAGCCTCTTCTTCTCAAAACATGAACATGTCAATCTCAGGTATTCGTGAAAGACATCAGCAGGAACTAGAGA
ATTTGACCCTGACCGCACAACCCTTCAAAACATTGAAGTTTTTTGCTCTGGCTATGGTTCAATATTGTAAGAGATCGGTATTCTACCTCCTGGCTAAAGG
AGGTTGGCTAATGCTATTAAGTACAGTGGTGGCAGCTGTTGGAGTTGTGCTTGTGACCATTGACAGTCCTCATGAAAAGCATGTTGAAGAACTTTCTCAT
TATCTGCGATTTGGATTGTGGTGGATTGCCCTTGGCGTTGCATCATCGATCGGTCTTGGATCTGGTTTGCATACTTTTGTTATGTATTTGGGTCCTCACA
TTGCCTTGTTCACGATTAAGGCAATGCAATGTGGCCGAGTTGATTTAAAAAGTGCTCCTTATGATACAATACAACTGAAAAGAGGTCCTTCGTGGCTTGA
CAGAGATTGCCATGAGTATGGGGACCCAGTGTTTCCATTATCACATGGATTGCGGGTTCCCCTTAGCAGCATATTGCCCCAGGTACAGGTAGAGGCTATT
TTGTGGGGTGTTGGGACTGCACTTGGGGAGCTTCCTCCTTATTTTATCTCAAGAGCAGCACGTATGTCAGGTAGCAACTTGGATGCCATGGAAGAATTGG
ATGCTTCTTCGGATGGAGATAGTGGAATCGTAGCTGCTCGCCTTAAAGCAATCAAACATTGGCTTCTGAACCACTCTCAACATTTGAACTTCTTCACAAT
CTTAGTGCTTGCTTCGGTGCCAAATCCTCTATTTGACCTTGCTGGCATTATGTGTGGACAATTTGGGGTTCCATTTTGGAAGTTTTTTCTGGCGACACTG
ATTGGAAAAGCGATTGTTAAAACTCACATACAGACGGTGTTCATTATTTCTGTTTGCAACAATCAACTTCTTAACTGGATAGAGAATGAGTTGATCTGGG
TACTCGGCCTTGTACCAGGTTTCGATTCTGCATTGCCTGACCTCACAGCAAAACTCCATGCAATGAAAGAAAAATATATGGCACCTGCACCTCCTGCATC
CGCAGATATAAAGGTCAAAAAATGGGATTTCTCGTTTACTGGAATCTGGAACACTGTTGTATGGCTCATGCTCTTGAACTTCTTTTTTAAGATTGTGAAT
GCAACTGCTCAGATGTATCTGAAAAAACAGCAGGAAAAGGAGCTAGCTGCATTGACAAATAGGGCATCAGCTTCGACGCATTCAGATTAG
AA sequence
>Potri.008G151300.1 pacid=42808679 polypeptide=Potri.008G151300.1.p locus=Potri.008G151300 ID=Potri.008G151300.1.v4.1 annot-version=v4.1
MVMGSGKRARASSSQNMNMSISGIRERHQQELENLTLTAQPFKTLKFFALAMVQYCKRSVFYLLAKGGWLMLLSTVVAAVGVVLVTIDSPHEKHVEELSH
YLRFGLWWIALGVASSIGLGSGLHTFVMYLGPHIALFTIKAMQCGRVDLKSAPYDTIQLKRGPSWLDRDCHEYGDPVFPLSHGLRVPLSSILPQVQVEAI
LWGVGTALGELPPYFISRAARMSGSNLDAMEELDASSDGDSGIVAARLKAIKHWLLNHSQHLNFFTILVLASVPNPLFDLAGIMCGQFGVPFWKFFLATL
IGKAIVKTHIQTVFIISVCNNQLLNWIENELIWVLGLVPGFDSALPDLTAKLHAMKEKYMAPAPPASADIKVKKWDFSFTGIWNTVVWLMLLNFFFKIVN
ATAQMYLKKQQEKELAALTNRASASTHSD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G14950 KMS1 Killing Me Slowly 1, SNARE ass... Potri.008G151300
[exp]
0 1
Potri.017G008901
[exp]
5.19 0.7777
AT1G67000 Protein kinase superfamily pro... Potri.008G125500
[exp]
9.64 0.7413
AT1G55730 ATCAX5 cation exchanger 5 (.1.2) Potri.010G249200
[exp]
11.66 0.7640
AT1G05710 bHLH bHLH153 basic helix-loop-helix (bHLH) ... Potri.019G112000
[exp]
12.24 0.7338
AT2G03630 unknown protein Potri.010G158000
[exp]
19.07 0.7242
AT3G55960 Haloacid dehalogenase-like hyd... Potri.008G068800
[exp]
23.81 0.7203
AT5G45550 MOB1-like MOB1-like, Mob1/phocein family... Potri.006G142500
[exp]
30.16 0.6607
AT5G17680 disease resistance protein (TI... Potri.019G069600
[exp]
32.55 0.7191
AT2G03070 MED8 mediator subunit 8 (.1) Potri.010G253100
[exp]
34.29 0.6923
AT2G23450 Protein kinase superfamily pro... Potri.007G034500
[exp]
36.66 0.7315

Potri.008G151300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.