Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PSAD1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03130 300 / 6e-105 PSAD-2 photosystem I subunit D-2 (.1) AT4G02770 299 / 2e-104 PSAD-1 photosystem I subunit D-1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G089400 [exp] 384 / 3e-138 AT1G03130 289 / 1e-100 photosystem I subunit D-2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021923 [exp] 323 / 8e-114 AT1G03130 309 / 4e-108 photosystem I subunit D-2 (.1) Lus10041209 [exp] 316 / 5e-111 AT1G03130 306 / 5e-107 photosystem I subunit D-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02531 [poplar] [flax] PsaD PsaD
Representative CDS sequence Show only first row Show all	>Potri.008G151600.1 pacid=42808102 polypeptide=Potri.008G151600.1.p locus=Potri.008G151600 ID=Potri.008G151600.1.v4.1 annot-version=v4.1 ATGGCAATGGCTACTCAAGCCTCTCTCTTCACCCCCACGACCCTCTCCACCCTAAAATCAAGCAACCAAACCATTGTTCCATGGAAACAATCATCCTTTT TACCAATCTCTAATGTCAAGGCACAAAGAAGCTTTAAGGTTGCTGCTGTAGAGGGAAAAACAGCTACAAAAGAGGCTCCAGTGGGATTTACTCCACCGGA GTTGGACCCAAGTACCCCATCACCAATTTTTGGTGGGAGCACCGGTGGACTGTTGAGGAAAGCCCAGGTAGAGGAGTTTTATGTGATCACTTGGGACTCC CCCAAGGAACAAATATTTGAAATGCCAACTGGGGGTGCAGCCATTATGAGGGAAGGCCCTAACTTGCTCAAGTTGGCCAGGAAAGAGCAGTGCTTGGCCC TTGGAACTAGGCTAAGGTCTAAGTACAAGATCAAGTACCAGTTTTACAGGGTGTTCCCCAATGGAGAGGTTCAGTACTTGCATCCCAAGGATGGTGTCTA CCCTGAGAAGGTGAACCCGGGGCGCCAAGGTGTCGGCCAGAATTTCAGGTCTATCGGAAAGAATGCTAGCCCAATTGAGGTCAAGTTCACCGGCAAGCAA GTTTATGACTTGTGA
AA sequence Show only first row Show all	>Potri.008G151600.1 pacid=42808102 polypeptide=Potri.008G151600.1.p locus=Potri.008G151600 ID=Potri.008G151600.1.v4.1 annot-version=v4.1 MAMATQASLFTPTTLSTLKSSNQTIVPWKQSSFLPISNVKAQRSFKVAAVEGKTATKEAPVGFTPPELDPSTPSPIFGGSTGGLLRKAQVEEFYVITWDS PKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGQNFRSIGKNASPIEVKFTGKQ VYDL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03130		PSAD-2	photosystem I subunit D-2 (.1)		Potri.008G151600 [exp]	0	1	PSAD1.2
AT4G16410			unknown protein		Potri.006G017500 [exp]	1.00	0.9884
AT1G54780		AtTLP18.3, TLP1...	thylakoid lumen protein 18.3, ...		Potri.013G026400 [exp]	1.73	0.9863
AT1G74730			Protein of unknown function (D...		Potri.015G065100 [exp]	2.64	0.9843
AT1G06680		PSII-P, OEE2, P...	OXYGEN-EVOLVING ENHANCER PROTE...		Potri.002G055700 [exp]	2.82	0.9858	Pt-OEE2.2
AT3G61470		LHCA2	photosystem I light harvesting...		Potri.001G056700 [exp]	2.82	0.9869
AT1G55670		PSAG	photosystem I subunit G (.1)		Potri.011G168700 [exp]	3.46	0.9853	Pt-PSAG.2
AT1G61520		LHCA3*1, LHCA3*...	photosystem I light harvesting...		Potri.014G172400 [exp]	3.87	0.9855	LHCA3*1.1,Lhca3
AT1G54500			Rubredoxin-like superfamily pr...		Potri.013G035700 [exp]	5.19	0.9841
AT3G12345			unknown protein		Potri.008G047800 [exp]	5.65	0.9843
AT3G61470		LHCA2	photosystem I light harvesting...		Potri.003G171500 [exp]	7.41	0.9805	LHCA2.1,Lhca2-2

Compare expression of checked genes

Potri.008G151600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.