Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19530 446 / 5e-158 ACL5 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G70310 136 / 3e-37 SPDS2 spermidine synthase 2 (.1) AT1G23820 135 / 4e-37 SPDS1 spermidine synthase 1 (.1.2) AT5G53120 100 / 1e-23 SPMS, SPDS3, ATSPDS3 spermidine synthase 3 (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G089200 [exp] 643 / 0 AT5G19530 447 / 2e-158 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.006G222200 [exp] 455 / 1e-161 AT5G19530 533 / 0.0 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.010G094600 [exp] 129 / 2e-34 AT1G70310 538 / 0.0 spermidine synthase 2 (.1) Potri.008G147200 [exp] 127 / 9e-34 AT1G70310 532 / 0.0 spermidine synthase 2 (.1) Potri.012G002600 [exp] 107 / 4e-26 AT5G53120 582 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6) Potri.015G018900 [exp] 101 / 3e-24 AT5G53120 545 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004913 [exp] 551 / 0 AT5G19530 441 / 2e-156 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10010538 [exp] 550 / 0 AT5G19530 439 / 1e-155 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10026457 [exp] 424 / 9e-149 AT5G19530 485 / 4e-173 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10000469 [exp] 372 / 1e-128 AT5G19530 407 / 2e-142 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10033437 [exp] 371 / 3e-128 AT5G19530 410 / 1e-143 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10030629 [exp] 124 / 5e-33 AT1G70310 531 / 0.0 spermidine synthase 2 (.1) Lus10030861 [exp] 125 / 7e-33 AT1G23820 514 / 0.0 spermidine synthase 1 (.1.2) Lus10039416 [exp] 123 / 1e-32 AT1G23820 509 / 0.0 spermidine synthase 1 (.1.2) Lus10029169 [exp] 123 / 3e-32 AT1G23820 562 / 0.0 spermidine synthase 1 (.1.2) Lus10012996 [exp] 108 / 1e-26 AT1G23820 537 / 0.0 spermidine synthase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01564 [poplar] [flax] Spermine_synth Spermine/spermidine synthase domain
Representative CDS sequence Show only first row Show all	>Potri.008G151800.1 pacid=42808495 polypeptide=Potri.008G151800.1.p locus=Potri.008G151800 ID=Potri.008G151800.1.v4.1 annot-version=v4.1 ATGGGTGAAATTTCTTGCTCTAATGGCATTGGCAATGGAAATGGTGTGAATGGAAAAACCCATTCATCACTGAATGGTTATAGGAAGAGCTGTTGGTATG AAGAAGAGATTGAAGAGAACTTGAGATGGTGTTTTGCTCTTAATAGTATTTTGCATACAGGGGCTTCTCGGTATCAAGACATTGCACTATTAGACACAAA GCCGTTTGGAAAGGCTTTAATCATTGATGGAAAGCTTCAAAGTGCGGAAGTGGATGAGTTCATCTACCATGAATCTCTTGTTCATCCAGCACTTCTTCAT CACTCAAGTCCTAAGACAGTCTTTATTATGGGAGGAGGTGAAGGCTCCACTGCACGAGAAATACTAAGACACAAGACAGCGGTGAAGGTTGTCATGTGTG ACATTGATGAGGAAGTGGTAGACTTCTGCAAGGCGTACTTGGTTGTGAATAGAGAAGCTTTCTGTGATCCAAGACTTGAGGTCATCATCAACGACGCCAG AGCTGAGCTAGAAATTGGAAAGGAGTGCTATGATGTGATCATAGGAGACCTCGCAGACCCAATAGAGGGAGGCCCATGTTACAAACTTTACACCAAATCC TTCTATGAACACACCGTCAAGCCTAAACTCAATCGCGGTGGCATATTTGTCACTCAGGCAGGGCCTGCTGGAATTTTCAGCCATACGGAAGTGTTCTCTT GTATCTGCAACACTTTAAAGCAGGTGTTCAAATATGTGGTGCCTTATTCAGCTCATATCCCTTCCTTTGCTGATACTTGGGGATGGGTCATGGCTTCAGA TACTCCATTTACGCTGAGTGCCGATGAGTCAGACAGCAGAATCAAACAGAGAATTAAAGGGGAAAACAGATATCTTGACGGCAAAACATTTTCATCAGCC TCAACCTTAAGCAAAGCTGTTCGAAAATCACTTGACAATGAAACTCATGTCTACACGGAGGGGACAGCCAGGTTCATTTATGGGCATGGCAGCGTTCAAA AACAGAATCAAGCATAA
AA sequence Show only first row Show all	>Potri.008G151800.1 pacid=42808495 polypeptide=Potri.008G151800.1.p locus=Potri.008G151800 ID=Potri.008G151800.1.v4.1 annot-version=v4.1 MGEISCSNGIGNGNGVNGKTHSSLNGYRKSCWYEEEIEENLRWCFALNSILHTGASRYQDIALLDTKPFGKALIIDGKLQSAEVDEFIYHESLVHPALLH HSSPKTVFIMGGGEGSTAREILRHKTAVKVVMCDIDEEVVDFCKAYLVVNREAFCDPRLEVIINDARAELEIGKECYDVIIGDLADPIEGGPCYKLYTKS FYEHTVKPKLNRGGIFVTQAGPAGIFSHTEVFSCICNTLKQVFKYVVPYSAHIPSFADTWGWVMASDTPFTLSADESDSRIKQRIKGENRYLDGKTFSSA STLSKAVRKSLDNETHVYTEGTARFIYGHGSVQKQNQA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Potri.008G151800 [exp]	0	1
AT4G39730			Lipase/lipooxygenase, PLAT/LH2...		Potri.003G107100 [exp]	1.41	0.9494
AT5G01890			Leucine-rich receptor-like pro...		Potri.006G108600 [exp]	1.73	0.9501
AT2G21050		LAX2	like AUXIN RESISTANT 2 (.1)		Potri.004G172800 [exp]	1.73	0.9387	PtrAUX5
AT5G02420			unknown protein		Potri.009G030200 [exp]	2.23	0.9356
AT2G24960			unknown protein		Potri.004G172900 [exp]	2.82	0.9373
AT5G01580		OSH1	OAS HIGH ACCUMULATION 1, gamma...		Potri.016G121900 [exp]	6.32	0.9242
					Potri.002G247200 [exp]	6.63	0.8799
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Potri.001G126100 [exp]	6.92	0.9255
AT1G09540	MYB	AtMYB61	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.013G001000 [exp]	7.00	0.9243
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Potri.003G179900 [exp]	7.34	0.8958

Compare expression of checked genes

Potri.008G151800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.