Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14920 772 / 0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT1G05380 666 / 0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) AT5G36740 439 / 4e-132 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G36670 397 / 6e-117 RING/FYVE/PHD zinc finger superfamily protein (.1) AT3G14980 331 / 3e-94 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G58610 231 / 1e-61 PHD finger transcription factor, putative (.1) AT2G37520 151 / 6e-37 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT3G53680 143 / 2e-34 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT5G63900 129 / 1e-30 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G36720 130 / 3e-30 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G087700 [exp] 2056 / 0 AT4G14920 805 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.002G051400 [exp] 568 / 2e-177 AT5G36740 625 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.005G211100 [exp] 546 / 2e-168 AT5G36740 635 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.001G392801 [exp] 357 / 8e-102 AT3G14980 620 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.001G153200 [exp] 316 / 6e-94 AT1G05380 340 / 1e-104 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) Potri.009G072600 [exp] 265 / 4e-72 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1) Potri.002G118600 [exp] 235 / 1e-63 AT5G58610 436 / 5e-137 PHD finger transcription factor, putative (.1) Potri.006G083600 [exp] 162 / 2e-40 AT2G37520 932 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.009G003900 [exp] 126 / 5e-29 AT2G27980 779 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006110 [exp] 1094 / 0 AT4G14920 868 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10010562 [exp] 1038 / 0 AT4G14920 847 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10042602 [exp] 483 / 3e-144 AT5G36740 607 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10022053 [exp] 460 / 3e-136 AT5G36740 617 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10042283 [exp] 233 / 1e-61 AT3G08590 993 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10015266 [exp] 231 / 8e-61 AT5G58610 558 / 7e-176 PHD finger transcription factor, putative (.1) Lus10018681 [exp] 211 / 3e-56 AT5G58610 308 / 1e-90 PHD finger transcription factor, putative (.1) Lus10007741 [exp] 202 / 2e-53 AT5G58610 323 / 4e-96 PHD finger transcription factor, putative (.1) Lus10012522 [exp] 189 / 4e-50 AT5G58610 285 / 4e-84 PHD finger transcription factor, putative (.1) Lus10025315 [exp] 164 / 6e-41 AT2G37520 845 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger CL0390 [poplar] [flax] PF16135 [poplar] [flax] TDBD Tify domain binding domain
Representative CDS sequence Show only first row Show all	>Potri.008G152600.1 pacid=42807773 polypeptide=Potri.008G152600.1.p locus=Potri.008G152600 ID=Potri.008G152600.1.v4.1 annot-version=v4.1 ATGGAAGAGGGAAGGAGATCTGGTGACCCATCTGGGTATATAGTGAAGAATAGGAGTTCTTCAGGTTGTTTGATTGTGAGAAAGAAAGGTAATGATGGTG TGGGAGGTGCGGGGTCTTCTGGTTCACACAAGGTTTTTGAGTCAAAGAAAGAGAAAAAGAGGCTTAGGGTGGAATACAGTGATTCAGGGTCTAGTGACGA GTTGTTAATGCCACCGCGTAGAAGGGTAGGCCCTGAAACATCGAGGGCATGTAATGGTTTGAGTGGTTATGAAGAGAGTTATACTGGCAGGAAGAGAAGC AGAGGGGAGGATATTAGGCGTAACGAGGTTGGTTTGATTGGTAGGAATGGGGGGGATTTGAGTGAAAGGAAGAGGAATAAGTTGGATATGTTTGGGTTTG ATGAGTATGATGGGAATGGCTTGGAAATGTCGAGGAGGCAGCAGTTTGATGATGGTGGAATTGAAGGGAGGGGGTATTTCAGGCCGATGATGCCAGGGAG AAGCGGCATTGCAAGGGAATATGAGTCAGGCTCCAGTAGGCATGCTGTTATTGATAGAAGAAAGAGTTCATATTTTGAGAGGTCAAGTGGGCCAAGTCAG GGAGGTGATATGGTTGGAGCTCGGTCATCTTTGTCGTTTTTGAGGGATAGTTATGATTCTGATGAACCCATTCGGGTTCAGGGGAAAAATGGTGTTTTAA AGGTGATGGTCAACAAGAAAAAGAAGGTTGGTGGGTATTTGAATAGTTATGATCTTTTGGAAGCTGAGGGAAATAGAAAGGTTTTGAGAGCAGAGGAATC TGTGAAGAAGAATGTTCTAATTCGTCCTCCTGTCTACTCTGATCCTAAAAGCCTTGATAAAGCTGGTTCAGTTTCTAGGACAGAGAAGAATGCTATGAAT ATGAAGAAATCGGTGTCAACTAAGAATGGTAAAGTCAGTGATAGGAATTCAGAAGACAGTGAGACATTGTTGAAGTTGGGACCAAAGAAAGTTGAAGCTC ACAATCCTATGAAGACACCATTGGCAACAAAGAAAAGCAAGGACCTTGACATGGATTCTGATGACAGTGATGCATCTTTAAAGCCGGGACCAAAGCACGA AGGCAAAAAAGCAGGGGACAAGCAGGGGACAAGCAGTGAAGGTGAAAAAACCCCTTACAACCAGCACCCAGAAACTAGAATCAAAGAAGGAAAAGTTAAG CGAGGTAGTGGCACGGAAAAACAGAAGTTGCGAGAACGGATAAGGGAGATGCTTCTGAATTCAGGCTGGACAATAGACTACAGGCCTAGAAGGAACAGAG ACTACCTCGATGCAGTTTATATAAATCCTACTGGAACAGCTTACTGGTCCATAATCAAGGCATATGATGCCCTTCTAAAGCAATTAGATGAGGTTGAGGC AAGATCCAGAGGTGATGGCTCTCCTTTTACGCCTCTATCAAATGACGTGCTCAGCCAACTAACAAGGAAGACAAAAAAGAAGATTGAGAAAGAATTGAAA AGGAAGAAAAGAGATGTCAGCGACAGCGAGGATGCAAGAGAAACTACTGTAAGAAAGTCAAGTACCAGGTATGATGAGGAGAGCCTGGACAGTGGTAGCC GTGAAGAGAAACTAAGCTCCTTTGTAAAGCAGGTTGGAAAGTCATTGAAGAGCAGAACTAGTGGCAATGGTTCTGTCAGTATAAACTCTATAAGTGAGAG TTCCACGCATCATTTACACGACGGCACTGAGAAACCATCATCTGGGTCCAATTCTCTTCTGGGAAGTAAAAGTAGAAAACTGGGCAGATGTATGTTGTTG GTACGGAATTCTAATGAGGGCACATTCCTGGATGGTGATGGATTTGTTCCATATTCGGGGAAACGGACACTCCTCTCCTGGTTGATTGACTGTGGAACTG TGCAGTTGAGTGAAAAGGTGTGCTACATGAATCGTCGACGAACAAAAGTGATGCTGGAAGGGTGGCTTACAAGAGATGGAATTCATTGTGGTTGCTGCAG CAAAATCCTCACAGTATCGAAGTTTGAGATCCATGCAGGGAGCAAACTGCGCCAGCCATTTCAAAATATATATCTAGACTCTGGTGTTTCTCTTTTGGAC TGCCAGATTGAAGCATGGAATAGGCAGGAATCAGTTAAACGCCTTGGTTTTCAAGCTGTAGACATTGATGGTAACGATCCAAATGATGATACATGTGGCC TCTGTGGAGATGGTGGAGATTTGATGTGTTGTGATGGCTGTCCATCAACATTTCATCAGAGCTGCTTAGATATAAAGATGCTTCCCCCAGGTGATTGGCA TTGTCCAAACTGTACTTGCAAATTCTGTGGGATAGCGAGTGATAAAAATGCCCAGGGAGATGATACAACAGTCTCCAAGCTTCTCACCTGTAGTCTGTGT GTAAAAAAATATCACAGTTCATGCACACAGGAGTTTGATGCTCTTTCCATTGACACCAACAGTCCAGTCGCTAGGTTTTGCGAGAAGAAATGCAGAGAGC TCTTTGAACAGTTGCAGAAGTATCTTGGGGTCAAACATGAACTAGATGCTGGGTTTTCATGGTCTCTAATTCATAGAGTAGATGCAGATTCTGATGCCTC TCTCCAAGGACTTCCACAAAGGGTGGAGTGCAATTCGAAGCTGGCTGTTTCTTTGTCTGTCATGGACGAGTGCTTTTTGCCAGTTGTTGATAGGAGGAGT GGGATCAATTTAATTCAGAATGTTCTCTACAACTGTGGATCAAACTTTAACCGGCTGAATTTTGGTGGCTTTTATGCTGTTATTCTGGAAAGGGGTGATG AAATAATATCTACTGCATCCATCAGGTTCCACGGAACTCGGTTGGCAGAAATGCCATTTATTGGAACTCGCCATATGTACAGGCGTCAAGGGATGTGCCG TCGGCTTTTCTATGCTATTGAATCGACACTATGCTCTCTGAAGGTTGAGAAACTGATTATCCCTGCAATTTCTGAACTCATGCATACATGGACAGAGGTT TTTGGTTTCACTACTCTTGATGAATTACTCAAGCAAGAATTGAAGTCTATGAATATGCTGGTGTTCCCTGGTATAGATATGTTCCAGAAGGAGCTCAGGC AAGAAAATATTGATGGAAAGAGGAGTACCAGCATAGGTTTTGGTGCAAACCAGATGGAGTTCGAAGAAGACAGTGAATGTATTAAAACTGTAGTAAATAA ATCTGATGCAGATTCTCCAGCTGGGCATGATGCTCATGATTGTGATAATAGTGGTTTGGAATGTTCGATTGGGAAAAATGAAGTGGCTAGTGCTAGTTCT GATTCCCAATGCGCTGATGTTTCCTCGAACAATGTCTCTACTATGAATAGTTCTTTGGATGTGTCTCATGGACTTCAAAGTGCGGTGCCACTCAAGGAGG AAACCATACAGACAAATTCTAAATCAGAGGACAAGTTGGTTCAATCTGCTGTGGATAAGAAAAGTGAATGTGTCTCCTACACAACTCATGATGTACGTGA GATGGTTAAATCCAAATCAGATTCTCCTGTTGAAGATACCTCTCTGACTGGTTTCAAGGGAGATGTGGCAGCTATGGATACAGATACCCAACTTCCAGGT GCTTCCCTAGGCGATGCCTCGGGGATGAGTGGTTCTTTAGATGCTTCTTGTGAACTTAAAGATGCAGCACCTTTTGATGGGACTTCATCTGCTGATTCTG AATCAGAGGGCAAGATACTCGGGTCTGCTTCTATAACAATCTTGAACGTGAGTGGTGACAGTCAAGAGGAAAATAAATCTGAAATGGCTTCTCCTGCCAA AGACAGTGATCAATCTTGTAAAGTGGATGGAATCAATCTATTTCATTCATTGAATCTGAATGAGTCTGTGTCCGGGGAACTTAAAGTTTCAAAATCAGTA GAAGAGAGTGGATGTGCTGATTCTCAATCAGAGGAAACGTTTGTGGAAATAACACTGAAGATGGAAACTATGCCCCTATCAGATTCCTCTGTTGTAAACA ATAACGTGGCTTGTAATGATGGTGATTTGAGTGATATTCCTACAGGAAGTGTCGATATGGTATCTCTTGAAGCTGTCCCTTCCATAGAGAAGACAACTGC AGAAAACTTTGTCGAGAAGGTTAATGAAATTTCAGGTGTATCTGTTTCTGGATTCAGTGGTGCCGAGGAGAATAACATGCAAATCGAGTCCAACCCAAAT AGTGAAATTGGCCATGAGAGGGGAATCAAATTAGACGTGGTTCCAGAGGCTGTTTCTGATGCAATGTATTGTGGAGGAGCTGCATCGCAAGTGCCGGAGG AGAGTTCTGTGATTGATGCAAGTGAAGGGAAAATCGAATCTGGCTCTATCTGA
AA sequence Show only first row Show all	>Potri.008G152600.1 pacid=42807773 polypeptide=Potri.008G152600.1.p locus=Potri.008G152600 ID=Potri.008G152600.1.v4.1 annot-version=v4.1 MEEGRRSGDPSGYIVKNRSSSGCLIVRKKGNDGVGGAGSSGSHKVFESKKEKKRLRVEYSDSGSSDELLMPPRRRVGPETSRACNGLSGYEESYTGRKRS RGEDIRRNEVGLIGRNGGDLSERKRNKLDMFGFDEYDGNGLEMSRRQQFDDGGIEGRGYFRPMMPGRSGIAREYESGSSRHAVIDRRKSSYFERSSGPSQ GGDMVGARSSLSFLRDSYDSDEPIRVQGKNGVLKVMVNKKKKVGGYLNSYDLLEAEGNRKVLRAEESVKKNVLIRPPVYSDPKSLDKAGSVSRTEKNAMN MKKSVSTKNGKVSDRNSEDSETLLKLGPKKVEAHNPMKTPLATKKSKDLDMDSDDSDASLKPGPKHEGKKAGDKQGTSSEGEKTPYNQHPETRIKEGKVK RGSGTEKQKLRERIREMLLNSGWTIDYRPRRNRDYLDAVYINPTGTAYWSIIKAYDALLKQLDEVEARSRGDGSPFTPLSNDVLSQLTRKTKKKIEKELK RKKRDVSDSEDARETTVRKSSTRYDEESLDSGSREEKLSSFVKQVGKSLKSRTSGNGSVSINSISESSTHHLHDGTEKPSSGSNSLLGSKSRKLGRCMLL VRNSNEGTFLDGDGFVPYSGKRTLLSWLIDCGTVQLSEKVCYMNRRRTKVMLEGWLTRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIYLDSGVSLLD CQIEAWNRQESVKRLGFQAVDIDGNDPNDDTCGLCGDGGDLMCCDGCPSTFHQSCLDIKMLPPGDWHCPNCTCKFCGIASDKNAQGDDTTVSKLLTCSLC VKKYHSSCTQEFDALSIDTNSPVARFCEKKCRELFEQLQKYLGVKHELDAGFSWSLIHRVDADSDASLQGLPQRVECNSKLAVSLSVMDECFLPVVDRRS GINLIQNVLYNCGSNFNRLNFGGFYAVILERGDEIISTASIRFHGTRLAEMPFIGTRHMYRRQGMCRRLFYAIESTLCSLKVEKLIIPAISELMHTWTEV FGFTTLDELLKQELKSMNMLVFPGIDMFQKELRQENIDGKRSTSIGFGANQMEFEEDSECIKTVVNKSDADSPAGHDAHDCDNSGLECSIGKNEVASASS DSQCADVSSNNVSTMNSSLDVSHGLQSAVPLKEETIQTNSKSEDKLVQSAVDKKSECVSYTTHDVREMVKSKSDSPVEDTSLTGFKGDVAAMDTDTQLPG ASLGDASGMSGSLDASCELKDAAPFDGTSSADSESEGKILGSASITILNVSGDSQEENKSEMASPAKDSDQSCKVDGINLFHSLNLNESVSGELKVSKSV EESGCADSQSEETFVEITLKMETMPLSDSSVVNNNVACNDGDLSDIPTGSVDMVSLEAVPSIEKTTAENFVEKVNEISGVSVSGFSGAEENNMQIESNPN SEIGHERGIKLDVVPEAVSDAMYCGGAASQVPEESSVIDASEGKIESGSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14920			Acyl-CoA N-acyltransferase wit...		Potri.008G152600 [exp]	0	1
AT4G14920			Acyl-CoA N-acyltransferase wit...		Potri.010G087700 [exp]	1.00	0.9356
AT3G43610			Spc97 / Spc98 family of spindl...		Potri.009G153300 [exp]	5.09	0.8534
AT3G15120			P-loop containing nucleoside t...		Potri.011G141400 [exp]	6.16	0.9205
AT5G08450			unknown protein		Potri.018G145542 [exp]	9.79	0.8966
AT2G27980			Acyl-CoA N-acyltransferase wit...		Potri.004G217600 [exp]	10.95	0.9070
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Potri.005G164100 [exp]	10.95	0.9182
AT5G53220			unknown protein		Potri.014G039200 [exp]	11.22	0.8569
AT4G36520			Chaperone DnaJ-domain superfam...		Potri.005G229300 [exp]	13.67	0.8696
AT1G68720		ATTADA, TADA	ARABIDOPSIS THALIANA TRNA ADEN...		Potri.010G132600 [exp]	14.42	0.9124
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Potri.005G254000 [exp]	15.39	0.7183

Compare expression of checked genes

Potri.008G152600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.