Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22425 316 / 7e-109 HISN5A, IGPD imidazoleglycerol-phosphate dehydratase (.1.2) AT4G14910 312 / 3e-107 HISN5B, IGPD HISTIDINE BIOSYNTHESIS 5B (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G087600 [exp] 340 / 5e-118 AT4G14910 381 / 2e-134 HISTIDINE BIOSYNTHESIS 5B (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024033 [exp] 313 / 2e-107 AT4G14910 387 / 1e-136 HISTIDINE BIOSYNTHESIS 5B (.1.2.3) Lus10041717 [exp] 313 / 2e-107 AT4G14910 382 / 6e-135 HISTIDINE BIOSYNTHESIS 5B (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [poplar] [flax] S5 PF00475 [poplar] [flax] IGPD Imidazoleglycerol-phosphate dehydratase
Representative CDS sequence Show only first row Show all	>Potri.008G152701.2 pacid=42808348 polypeptide=Potri.008G152701.2.p locus=Potri.008G152701 ID=Potri.008G152701.2.v4.1 annot-version=v4.1 ATGGATTCTCATACTACTATTACTACTAAAACCTCAAAACCACTTCAGGCCTACCGTTCCTCTCTAACCACCTCTTCTCCAATCGAATCCCGTACAAATC TTTTTATTATTAACAACTCTATTTTCATCAGTTTCTTTCCACTATATTTTGCCAAATTTGGGTTTTTTTTTGGGTGGTGTTCAGCAGCAAGTGCTCGGAT TGGGGAAGTGAAGAGAGTCACTAATGAAACGAATGTTTCAGTCAAGTTTAACTTGGATGGGACTGGAATTGCTGATTCTACTACTGGCATTCCCTTTCTT GATCACATGTTAGACCGACTTTCTTCGCACGGGCTTTTTGATGTGCATGTGAGGGCAACTGGCGATATTCACATTGATGATCATCACACTAACGAAGATG TTGCTCTCGCTATTGGAACTGCTTTGCTGCAAGCGCTTGGGGATAGGAAAGGAATTAATCGGTTTGGCGACTTCTCAGCTCCTCTTGATGAGGCATTAAT ACATGTTTCCTTGGATTTGTCTGGCCGGCCATATTTGGGTTATGATTTGCAAATTCCTACTCAGAGAGTTGGAACATATGATACTCAGCTTGCTGGAAGA AATTCTCATCATATTATTGAGGCAACCTTCAAAGCTTTTGCCAGGGCTCTTCGACAAGCAACAGAATATGACCCACGTCGCCTCGGGACTGTGCCAAGCT CAAAGGGGGTTCACTATCCATTAGGAAGCCAATTTTCATGGCATATTGTAGAGTTATTTAACATTAGAAGGTTTTCCTGCCCATTCCACATAATACTTCT TGTAACGAGAACTCTAAAGCACGTTTGA
AA sequence Show only first row Show all	>Potri.008G152701.2 pacid=42808348 polypeptide=Potri.008G152701.2.p locus=Potri.008G152701 ID=Potri.008G152701.2.v4.1 annot-version=v4.1 MDSHTTITTKTSKPLQAYRSSLTTSSPIESRTNLFIINNSIFISFFPLYFAKFGFFFGWCSAASARIGEVKRVTNETNVSVKFNLDGTGIADSTTGIPFL DHMLDRLSSHGLFDVHVRATGDIHIDDHHTNEDVALAIGTALLQALGDRKGINRFGDFSAPLDEALIHVSLDLSGRPYLGYDLQIPTQRVGTYDTQLAGR NSHHIIEATFKAFARALRQATEYDPRRLGTVPSSKGVHYPLGSQFSWHIVELFNIRRFSCPFHIILLVTRTLKHV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22425		HISN5A, IGPD	imidazoleglycerol-phosphate de...		Potri.008G152701 [exp]	0	1
AT1G27170			transmembrane receptors;ATP bi...		Potri.011G012801 [exp]	4.47	0.9097
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Potri.008G188700 [exp]	8.94	0.8545
AT5G53540			P-loop containing nucleoside t...		Potri.012G027901 [exp]	10.00	0.8879
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G024900 [exp]	11.22	0.8774
AT4G25550			Cleavage/polyadenylation speci...		Potri.012G140301 [exp]	15.87	0.8813
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Potri.014G124100 [exp]	19.36	0.8877
AT5G05800			unknown protein		Potri.001G243108 [exp]	22.27	0.8837
AT4G02550			unknown protein		Potri.010G215600 [exp]	28.33	0.8803
AT3G42860			zinc knuckle (CCHC-type) famil...		Potri.001G318100 [exp]	29.47	0.8310
					Potri.017G119750 [exp]	29.73	0.8583

Compare expression of checked genes

Potri.008G152701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.