Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22440 710 / 0 FRIGIDA-like protein (.1) AT4G14900 677 / 0 FRIGIDA-like protein (.1) AT5G48385 160 / 8e-43 FRIGIDA-like protein (.1) AT1G31814 95 / 1e-20 FRL2 FRIGIDA like 2 (.1) AT5G16320 92 / 7e-20 FRL1 FRIGIDA like 1 (.1) AT5G27230 81 / 6e-16 Frigida-like protein (.1) AT5G27220 60 / 3e-09 Frigida-like protein (.1) AT4G00650 55 / 6e-08 FLA, FRI FLOWERING LOCUS A, FRIGIDA-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G078701 [exp] 236 / 7e-71 AT3G22440 189 / 4e-53 FRIGIDA-like protein (.1) Potri.014G175200 [exp] 196 / 8e-56 AT5G48385 629 / 0.0 FRIGIDA-like protein (.1) Potri.002G239900 [exp] 196 / 9e-56 AT5G48385 655 / 0.0 FRIGIDA-like protein (.1) Potri.007G050800 [exp] 175 / 6e-48 AT5G48385 296 / 6e-93 FRIGIDA-like protein (.1) Potri.002G206200 [exp] 126 / 4e-31 AT5G16320 220 / 1e-65 FRIGIDA like 1 (.1) Potri.005G044000 [exp] 102 / 9e-23 AT5G27230 125 / 2e-29 Frigida-like protein (.1) Potri.005G043900 [exp] 98 / 3e-21 AT5G27230 119 / 3e-27 Frigida-like protein (.1) Potri.005G044100 [exp] 97 / 4e-21 AT5G27230 116 / 1e-26 Frigida-like protein (.1) Potri.005G044200 [exp] 73 / 3e-13 AT5G27220 129 / 5e-30 Frigida-like protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010560 [exp] 736 / 0 AT3G22440 714 / 0.0 FRIGIDA-like protein (.1) Lus10006113 [exp] 724 / 0 AT3G22440 686 / 0.0 FRIGIDA-like protein (.1) Lus10002146 [exp] 184 / 2e-51 AT5G48385 640 / 0.0 FRIGIDA-like protein (.1) Lus10008744 [exp] 181 / 2e-50 AT5G48385 629 / 0.0 FRIGIDA-like protein (.1) Lus10042965 [exp] 127 / 4e-31 AT1G31814 237 / 8e-72 FRIGIDA like 2 (.1) Lus10032466 [exp] 126 / 8e-31 AT1G31814 227 / 6e-68 FRIGIDA like 2 (.1) Lus10043012 [exp] 85 / 4e-17 AT4G00650 176 / 5e-50 FLOWERING LOCUS A, FRIGIDA-like protein (.1) Lus10032514 [exp] 84 / 9e-17 AT5G51070 1280 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Lus10022433 [exp] 77 / 1e-14 AT4G00650 202 / 7e-60 FLOWERING LOCUS A, FRIGIDA-like protein (.1) Lus10016738 [exp] 73 / 2e-13 AT4G00650 193 / 8e-57 FLOWERING LOCUS A, FRIGIDA-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07899 [poplar] [flax] Frigida Frigida-like protein
Representative CDS sequence Show only first row Show all	>Potri.008G153000.2 pacid=42806554 polypeptide=Potri.008G153000.2.p locus=Potri.008G153000 ID=Potri.008G153000.2.v4.1 annot-version=v4.1 ATGGGGTCGATCCCCGATCCAGGCGAGTTAACTGAGCTAACTCGGCCCAGCTTTGACGAGTTCCAGCGTCAAACTTCACTGATGACAAGCTGCACTCTCC TCTGGAAAGAACTCTCCGATCACTTCACTTCACTGGAACAAAACCTCCAGAAGAAATCAGAAGCTCTTAAACACAAAATCCAAACCCTAGACAACCAAAC AAAAGCTTCCCTTGCTTCGCTCAAGAAGCGCGAGGTAACAATCGACGGTAGCGTCGAGATCGCACTAGAGCGCGTCGAAGAACACAGGGAACTAGCTCTC AAGTCACTGTCAGATCCTGATTATGAAAATCCGGATGGAGAGGTGGATGATGGAGATGGATCTTTTATGGTTTTGAAGTCTCTCTGTTTGACAATGGAGT CGCGTGACTTTTGGAATTTTGTGATTACCAAAAAGAAGGAAATTGAAATTTTGAGGAAGCAAATTCCTTTGGCTCTAGCTGAGTGTGTGGATCCGGCAAA GTTTGTTATAGAAGCGATATCGGAGGTGTTTCCGGTGGATAAAAGAGGGGAAAGAAGTGGTGAAAAGGGAAATGATTTAGGATGGGCTTGTGTGTTAATC TTGGAGAGTTTGATTCCGGTTGTCGTGGACCCAGTAATCGGGAAATCCAGGTTGTTAGTTACGCCTACTGTTAAGGAGAGAGCGAAGGAGATAGCGGAGA CTTGGAAGAAGAGTTTGGAGGAAAGAGGTGGGATTGAGAATGTCAAGACTCCTGATGTGCATACTTTCTTGCAGCATTTGGTGACTTTCGGGATTGTGAA GAAGGATGATGTGGATTTGTATAGGAAGCTTGTTGTTGGGTCTGCTTGGAGGAAACAAATGCCTAAGCTTGCTGTCTCTCTTGGGTTGGGTGATAAAATG CCTGATATGATTGAAGAATTAATCAGTAGGGGACAACAGCTTGATGCAGTGCATTTCACCTATGAAGTTGGCCTTGTGGATAAGTTCCCCCCTGTACCCT TGCTGAAAGCTTTTTTGAAGGATGCTAAGAAGGCTGCAGCTTCTGTATTGGAGGATCCTGAAAATACTGGTCGAGCTGCGCATCTTGCTGCACGAAAGGA GCAGTCAGCGCTCCGGGCTGTCATTAAGTGCGTTGAAGATTACAAACTAGAGTCACGGTTCCCTCCAGAAAACCTTAAGAAACGCCTTGAACAACTGGAG AAGGCCAAGACAGAGAAGAAAAGGCCAGCTGCGGTTCCAGCCAACAAACGAACACGTGCCAGCAATGGTGGCCCAATGCCCCCAGCCAAGGCTGGTCGCT TGACGAATGCATATGTGTCATCTTTTCCTGCACCTCCAACTTTTGTCAGGTCTCCCTCACATACACAATACCCTACTGGGGTACCGGCATATCCTTCTCC ACCGGCTGTTTATGGCAGCAGGAGTCCACCATCTCCATATGCTTACTCTCCTGAGGCTGCCGCTCCAATTGCTGGGTCATACCCTGGAGCTCCTTTGAAT TATCCAGCATATGGAGGGTATGGCAATGGTTTCGCACCAGCTTATCAGCAGGCTTACTACCGATAG
AA sequence Show only first row Show all	>Potri.008G153000.2 pacid=42806554 polypeptide=Potri.008G153000.2.p locus=Potri.008G153000 ID=Potri.008G153000.2.v4.1 annot-version=v4.1 MGSIPDPGELTELTRPSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSEALKHKIQTLDNQTKASLASLKKREVTIDGSVEIALERVEEHRELAL KSLSDPDYENPDGEVDDGDGSFMVLKSLCLTMESRDFWNFVITKKKEIEILRKQIPLALAECVDPAKFVIEAISEVFPVDKRGERSGEKGNDLGWACVLI LESLIPVVVDPVIGKSRLLVTPTVKERAKEIAETWKKSLEERGGIENVKTPDVHTFLQHLVTFGIVKKDDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKM PDMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAASVLEDPENTGRAAHLAARKEQSALRAVIKCVEDYKLESRFPPENLKKRLEQLE KAKTEKKRPAAVPANKRTRASNGGPMPPAKAGRLTNAYVSSFPAPPTFVRSPSHTQYPTGVPAYPSPPAVYGSRSPPSPYAYSPEAAAPIAGSYPGAPLN YPAYGGYGNGFAPAYQQAYYR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22440			FRIGIDA-like protein (.1)		Potri.008G153000 [exp]	0	1
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Potri.004G059000 [exp]	2.00	0.7715	GSK1.2
AT5G48385			FRIGIDA-like protein (.1)		Potri.002G239900 [exp]	2.64	0.8098
AT5G64360		EIP9	EMF1-Interacting Protein 1, Ch...		Potri.017G044600 [exp]	5.47	0.7966
AT5G12330		LRP1	LATERAL ROOT PRIMORDIUM 1, Lat...		Potri.003G196100 [exp]	7.48	0.7078
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Potri.010G154300 [exp]	7.48	0.7369
AT5G13660			unknown protein		Potri.008G051300 [exp]	7.54	0.7738
AT1G24625	C2H2ZnF	ZFP7	zinc finger protein 7 (.1)		Potri.001G298700 [exp]	10.39	0.7339
AT2G23520			Pyridoxal phosphate (PLP)-depe...		Potri.007G036100 [exp]	10.77	0.6692
AT1G33055			unknown protein		Potri.001G452500 [exp]	15.49	0.6915
AT2G38090	MYB	MYB-R	Duplicated homeodomain-like su...		Potri.010G193000 [exp]	17.02	0.7486

Compare expression of checked genes

Potri.008G153000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.