Plant FIBer expression Database

Potri.008G153100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G22450 254 / 2e-82 Ribosomal L18p/L5e family protein (.1)
AT1G08845 104 / 1e-26 Ribosomal L18p/L5e family protein (.1.2)
AT3G20230 95 / 7e-23 Ribosomal L18p/L5e family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G029300
[exp]
110 / 7e-29 AT1G08845 295 / 1e-102 Ribosomal L18p/L5e family protein (.1.2)
Potri.013G108700
[exp]
96 / 2e-23 AT3G20230 226 / 6e-76 Ribosomal L18p/L5e family protein (.1)
Potri.019G081000
[exp]
95 / 1e-22 AT3G20230 249 / 4e-85 Ribosomal L18p/L5e family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006115
[exp]
354 / 3e-121 AT3G22450 231 / 6e-74 Ribosomal L18p/L5e family protein (.1)
Lus10010558
[exp]
345 / 1e-117 AT3G22450 238 / 8e-77 Ribosomal L18p/L5e family protein (.1)
Lus10001727
[exp]
112 / 2e-29 AT1G08845 268 / 1e-92 Ribosomal L18p/L5e family protein (.1.2)
Lus10004129
[exp]
112 / 1e-26 AT5G27240 265 / 4e-82 DNAJ heat shock N-terminal domain-containing protein (.1)
Lus10020797
[exp]
92 / 2e-21 AT3G20230 238 / 1e-80 Ribosomal L18p/L5e family protein (.1)
Lus10007379
[exp]
92 / 2e-21 AT3G20230 234 / 3e-79 Ribosomal L18p/L5e family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0267 S11_L18p PF00861 Ribosomal_L18p Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Representative CDS sequence
>Potri.008G153100.1 pacid=42807542 polypeptide=Potri.008G153100.1.p locus=Potri.008G153100 ID=Potri.008G153100.1.v4.1 annot-version=v4.1
ATGACATCAACCCGAGTTAGGGTATTCATCAGCCTCCAATCACGACTGAGCTCACATTTTCTCTCAAGAGTAAGTAGCTTTTGCTCGAAGGCTTCCACAA
CTATTGACAAGGCAAACGAAACGACCGAACAAGCATCGCTTCAAGAGAGGTCAACCAGCTACTCTAGCAAGATTCATTTTTCTCCGTTACTCGGTGATAG
CAGGCCTAATTTGGATGGTTATAATATTGAGCTCGTGGACGATGACGCCTGGCAGGTATCATCGAGTTTAGTTCATGCATGGCGAGGATTGGATAGGGAA
AAGGAAGCGAAGTCAGTGATTGAGGCATTCGGTGAGCAGTTTGATGATGTTAAATCTTTGCAGGGTAACCCTGATTTTGATGAGATTGATAATATGAGAA
TTCGAGGTAATCTCTTTTACAAGCTTGATCGGGACTCCAAAGAGTTTGAAGAGTACAGTTTCGACTTCCACAGGAAGAACTCTTGGAGGAGGAAAGATGA
TCCTAAGGGAAATGAAAAGAAAGAATCTTCAAAGAAGAATGAAAGTAGTAAAGAAAGCAAAAGGAAGGAAAACAGAAGCTGTAATTCAGCTTTTGATGTT
GAAAAACTTCCAAGAATAGCAAAGGATCCGAAGGTTTATACTTTGGTTAGTAACATGGATAGTTCTGGCGGTGCCGAGAAAAAGAAGATCAGGACTCCGA
CTTTCAATCAGCTTACAGGTCCTTATCATGAGCCATTTTGCCTTGACATTTACATATCAAAAGCCTCTGTCCGCGCTTGTGTTATACACCGGGTAACTAG
TAAGGTGGTGGCCGTGGCACATTCGATATCTAAGGATTTTAAATTCGACCTGGCTTCAACCAAGAATGCAACTGCTTGTGCTGCTGTTGGAGGGATTTTA
GCTCAGAGAGCATTAGCAGATGATATTCATGATGTGGTCTACACGCCAAGAAAGGGGGAGAGATTGGAGGGAAAGCTTCAGATTGTGCTGCAGGCTATTA
TCGACAATGGCATTAATGTGAAGGTGAAGCTTAAGCAAAGGAAGCCATCGAAGGCTAGGTTCCCATCCACTGGTTTGAAGCTTGATGCAGGGTTGACTGT
TCAATGA
AA sequence
>Potri.008G153100.1 pacid=42807542 polypeptide=Potri.008G153100.1.p locus=Potri.008G153100 ID=Potri.008G153100.1.v4.1 annot-version=v4.1
MTSTRVRVFISLQSRLSSHFLSRVSSFCSKASTTIDKANETTEQASLQERSTSYSSKIHFSPLLGDSRPNLDGYNIELVDDDAWQVSSSLVHAWRGLDRE
KEAKSVIEAFGEQFDDVKSLQGNPDFDEIDNMRIRGNLFYKLDRDSKEFEEYSFDFHRKNSWRRKDDPKGNEKKESSKKNESSKESKRKENRSCNSAFDV
EKLPRIAKDPKVYTLVSNMDSSGGAEKKKIRTPTFNQLTGPYHEPFCLDIYISKASVRACVIHRVTSKVVAVAHSISKDFKFDLASTKNATACAAVGGIL
AQRALADDIHDVVYTPRKGERLEGKLQIVLQAIIDNGINVKVKLKQRKPSKARFPSTGLKLDAGLTVQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G22450 Ribosomal L18p/L5e family prot... Potri.008G153100
[exp]
0 1
AT2G22070 pentatricopeptide (PPR) repeat... Potri.007G085500
[exp]
1.41 0.9399
AT5G06540 Pentatricopeptide repeat (PPR)... Potri.016G065500
[exp]
1.41 0.9431
Potri.004G118950
[exp]
2.23 0.9256
AT1G20230 Pentatricopeptide repeat (PPR)... Potri.002G021300
[exp]
4.00 0.9190
AT1G23450 Tetratricopeptide repeat (TPR)... Potri.008G212000
[exp]
4.89 0.9271
AT2G29950 ELF4-L1 ELF4-like 1 (.1) Potri.001G251600
[exp]
6.00 0.9086
AT1G16480 Tetratricopeptide repeat (TPR)... Potri.007G068600
[exp]
6.24 0.9292
AT5G08310 Tetratricopeptide repeat (TPR)... Potri.005G090600
[exp]
6.48 0.9204
AT1G69350 Tetratricopeptide repeat (TPR)... Potri.008G093000
[exp]
6.92 0.9247
AT3G25970 Pentatricopeptide repeat (PPR)... Potri.007G146800
[exp]
8.77 0.9100

Potri.008G153100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.