Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14850 283 / 6e-91 MEF11, LOI1 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G01580 115 / 3e-29 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18520 114 / 1e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G13230 112 / 7e-28 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 110 / 2e-27 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G09950 110 / 5e-27 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G26782 108 / 8e-27 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G33680 108 / 1e-26 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G15130 108 / 1e-26 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66500 107 / 2e-26 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G086900 [exp] 364 / 1e-122 AT4G14850 964 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G187800 [exp] 124 / 4e-32 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G053100 [exp] 122 / 2e-31 AT2G33680 388 / 3e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G111300 [exp] 117 / 1e-29 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G021700 [exp] 117 / 1e-29 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G244500 [exp] 117 / 2e-29 AT3G15130 891 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G129500 [exp] 117 / 2e-29 AT5G09950 1001 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G108000 [exp] 116 / 2e-29 AT2G34400 640 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G129100 [exp] 115 / 8e-29 AT5G09950 1287 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006123 [exp] 295 / 7e-96 AT4G14850 923 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010551 [exp] 201 / 2e-58 AT4G14850 668 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031994 [exp] 122 / 2e-31 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035164 [exp] 122 / 4e-31 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038839 [exp] 116 / 2e-29 AT5G13230 715 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038400 [exp] 115 / 7e-29 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 114 / 1e-28 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031989 [exp] 114 / 1e-28 AT3G26782 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035619 [exp] 114 / 2e-28 AT4G35130 794 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010320 [exp] 112 / 7e-28 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Potri.008G153700.1 pacid=42807337 polypeptide=Potri.008G153700.1.p locus=Potri.008G153700 ID=Potri.008G153700.1.v4.1 annot-version=v4.1 ATGCGCCGTGAAAACATCCATTTCACTTTCCCATGTGCATTCAAAGCATCTGCTGCGCTTTGCTTGCCTTTTACAGAGAAGCAGATTCACGCGGTTGCGG TGAAGCTGGGCCAAATTAACGATAAATTTGTTGGCTGCACCGCGTTTGATATGTATTCGAAAACTGGGCTTAAATTTGAAGCGAAACGCCTGTTTGACGA AATGGCTGAAAGAAACATCGCTACGTGGAATGCATACTTTTCTAATGCAGTGCTTGATGGGAATCCTCGGAAAGCAATTGATACGTTTATTGATTTCCAC CGGGTGGTTGGAGAACCCGATTCGATAACATTTTGTGCGTTCTTGAATGTTTGTGCTGATGCGAGTTATTTGGACTTTGGGAGGCAGCTGCATGGGTTTG TGATTCGCAGTGGGTTTGAAGGGGATGTGTCGGTTGCAATGGGACCCTTCATTTTCATGGGAACTGTAAGGAAGTTGGATTGGCTGAAATATTTTCAGTG GGACGGGGAGGATTCAGTTTCGTGGTGGCTTTCAGGACTTGAATTGGGGAGGTCAGTTCATGCACTTGCAGTGAAAGCATGCGTGGAGGGTGATGTTTTT GTCGGGAGTGCCCCTGTTGACATGTATGGAAAATGCGGAAGTAGTGAAGATTGTGAGCAGGACTTTCATGAGATGCCTGAAAGGAATTTGGTTTCCTGGA ATGCTATGATTAGCGGGTATGCATATCACGGGGATGTTGCATGGCCATCACATTGTTTGAAGAAATGCAGCCTGACGCGGTGCTGA
AA sequence Show only first row Show all	>Potri.008G153700.1 pacid=42807337 polypeptide=Potri.008G153700.1.p locus=Potri.008G153700 ID=Potri.008G153700.1.v4.1 annot-version=v4.1 MRRENIHFTFPCAFKASAALCLPFTEKQIHAVAVKLGQINDKFVGCTAFDMYSKTGLKFEAKRLFDEMAERNIATWNAYFSNAVLDGNPRKAIDTFIDFH RVVGEPDSITFCAFLNVCADASYLDFGRQLHGFVIRSGFEGDVSVAMGPFIFMGTVRKLDWLKYFQWDGEDSVSWWLSGLELGRSVHALAVKACVEGDVF VGSAPVDMYGKCGSSEDCEQDFHEMPERNLVSWNAMISGYAYHGDVAWPSHCLKKCSLTRC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14850		MEF11, LOI1	lovastatin insensitive 1, Pent...		Potri.008G153700 [exp]	0	1
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Potri.010G077800 [exp]	9.38	0.8546
AT4G35040	bZIP	bZIP19	Basic-leucine zipper (bZIP) tr...		Potri.004G175200 [exp]	9.48	0.8572
AT5G08305			Pentatricopeptide repeat (PPR)...		Potri.007G073100 [exp]	9.79	0.8711
AT1G43760			DNAse I-like superfamily prote...		Potri.002G000350 [exp]	18.16	0.8694
AT5G46030			unknown protein		Potri.011G097300 [exp]	22.22	0.8344
AT2G15530			RING/U-box superfamily protein...		Potri.011G103301 [exp]	23.45	0.8474
AT3G22690			unknown protein		Potri.006G245300 [exp]	25.05	0.8679
AT5G19151			unknown protein		Potri.008G203800 [exp]	29.59	0.8467
AT5G61370			Pentatricopeptide repeat (PPR)...		Potri.012G068400 [exp]	35.98	0.8572
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Potri.004G002800 [exp]	36.33	0.8398

Compare expression of checked genes

Potri.008G153700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.