Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14840 329 / 7e-106 unknown protein AT3G22520 222 / 9e-65 unknown protein AT1G05410 121 / 2e-29 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G086700 [exp] 879 / 0 AT3G22520 320 / 5e-102 unknown protein Potri.010G086600 [exp] 130 / 2e-32 AT1G05410 442 / 2e-152 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006124 [exp] 402 / 3e-130 AT3G22520 340 / 4e-106 unknown protein Lus10041202 [exp] 386 / 9e-128 AT3G22520 327 / 1e-104 unknown protein Lus10010551 [exp] 403 / 4e-127 AT4G14850 668 / 0.0 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000233 [exp] 240 / 3e-76 AT3G22520 215 / 1e-66 unknown protein Lus10021916 [exp] 149 / 1e-42 AT3G22520 129 / 5e-36 unknown protein Lus10021915 [exp] 118 / 4e-28 AT1G05410 390 / 7e-132 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10041201 [exp] 114 / 5e-27 AT1G05410 325 / 4e-107 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10010550 [exp] 86 / 1e-17 AT1G05410 356 / 1e-118 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G153800.2 pacid=42806359 polypeptide=Potri.008G153800.2.p locus=Potri.008G153800 ID=Potri.008G153800.2.v4.1 annot-version=v4.1 ATGGCAGATCCGCTGCACTCTCCTTCCAGTAAACCTCATGATCATGGACCACACACTGCATTTGGTTTGATTTTCGGTCCAGATTATGGCACGCCAGTCT CGACAAGCTCTCAGCAGAATGAGCAACAATTAATGGAGAATGATATCCCCCATGGGAGTACTGGTAGCATGCACCTGCTAGATGATAAAGATATTTTTGG TCAGCAGAATGAGGAATTTGTGGACAATGGTGTTCATCGTGAAAGTAATGGGGGTGGGCATCTAATGGATGAGCATAATTTCTTTGGTCAGCAGAACGAG CAATTTATGGAGAGTGATACCCCTAGTAAGAGTGATGGTGGAAGGATCACAATAGACGTGAACAGTTCTGTTAGGCTAGTTATGCCAGGTGAATCTGGTG AAGGTTTGCCATTTGCTCCGACAGATTGGCCAAATCCTGGTGATAACTGGGAATGGAGAGTAGGAAAGAGGGTTAACTCTTCTGGCCACTTCCAGGACAG ATTCATTTACCTTCCAAAAAGCCTTCAGGGGAAAAAGAAGCAGATGTTTGCTAGCAGGCCTGCACTTGAAAATTACATTCGATCTGCATTCCCAGGTGCA GATATTGATGCATTTTTTGCATCGTTTACATGGAAGATACCTGCAAAAGTCCAGTCTCCAACAAAAGTGGAAGCTGCGCCTCTCCCTCTTGAGAACCCTC TTGAAGATGAAACTTTGAAAGTTCAAGAAGGGAAAGTAGAAAATCCTCGTTATGGTCGGAGGCAAAGGAAGCAGATTTTACCCATGTTAACAGAAGAAGC TGAAGAACAGAAACAAGAAAAGAAACAGAGAACTCCACGTTCCAGCCAGAGGAAAAGAAAAGAGGATGGGAAACAGGATGCACCTACATCAGCATCCACG TCAAAGCGAAAAGCTACGCGTTCTTCTAAAAGATCTGTGTCTCATACTGCTAATGGTGAAATTGTAATAACTGAGCCTGAACCTGTAGTTAATGTCATTC CAGAGGGTTTTGATAACTATCTCAGTTCTTTGGAAGATATTCTCACTCAACCTCTCTCTGAAACTCAAGTAGCATACTCTGCAGCCACTGAAGCTCCTCT TACCGAAAGTGATATGGCAAAAGCCCGAAGCAAGCTTTCTTCCCTTCTACTCATGGATTTTCCCTCTCTAGTCTCGTCCAGAAGCATTTCCAAACTCACA ACTATAGCATCCAAACTAAGGAAGGATCCCACTCTTAGTGCCGAACAACTTGTTAAGTTAAAATTGATAGAGGAAATCCCATCATTCAGCAAGGTTTTTC TTGAGAGTAGGCAAACAATAGAGCAAGTTTACAAGTTCTTTGGTACCCTTGAGGCAAACAAGGCGAAGGTCAGCTCTCTGAGGGATGAATATAATGAATT GAAGGAGAAAGCAGACCAGCTTCAGTCACAGGTTGATTCCAACTTACTGACTGTGCAGGAAATTGACAATCAAATTTTTCAACTTCAAACCTGGCGAGCA GAGCTCACTGATACAATTGAGAATAACAAGTCAGCAAAGGTCGAGGTGGCCTCTGCTCAAGGGATGGTGGCAAATTCAATTCCAAATGTTGTGCGCGATA TTCAGGTTGCCAACTCCAAAATTCCAGAATGGGAGCTGAAAAGGGCAAATGCAGAAAAACGTGAAGCTGAAATTCTGGAAAAGTTTGCCCCTTTAAAAGG GTTTTCCTTGTAG
AA sequence Show only first row Show all	>Potri.008G153800.2 pacid=42806359 polypeptide=Potri.008G153800.2.p locus=Potri.008G153800 ID=Potri.008G153800.2.v4.1 annot-version=v4.1 MADPLHSPSSKPHDHGPHTAFGLIFGPDYGTPVSTSSQQNEQQLMENDIPHGSTGSMHLLDDKDIFGQQNEEFVDNGVHRESNGGGHLMDEHNFFGQQNE QFMESDTPSKSDGGRITIDVNSSVRLVMPGESGEGLPFAPTDWPNPGDNWEWRVGKRVNSSGHFQDRFIYLPKSLQGKKKQMFASRPALENYIRSAFPGA DIDAFFASFTWKIPAKVQSPTKVEAAPLPLENPLEDETLKVQEGKVENPRYGRRQRKQILPMLTEEAEEQKQEKKQRTPRSSQRKRKEDGKQDAPTSAST SKRKATRSSKRSVSHTANGEIVITEPEPVVNVIPEGFDNYLSSLEDILTQPLSETQVAYSAATEAPLTESDMAKARSKLSSLLLMDFPSLVSSRSISKLT TIASKLRKDPTLSAEQLVKLKLIEEIPSFSKVFLESRQTIEQVYKFFGTLEANKAKVSSLRDEYNELKEKADQLQSQVDSNLLTVQEIDNQIFQLQTWRA ELTDTIENNKSAKVEVASAQGMVANSIPNVVRDIQVANSKIPEWELKRANAEKREAEILEKFAPLKGFSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14840			unknown protein		Potri.008G153800 [exp]	0	1
AT3G17940			Galactose mutarotase-like supe...		Potri.017G129300 [exp]	1.73	0.8534
AT1G24440			RING/U-box superfamily protein...		Potri.008G181300 [exp]	2.23	0.8232
AT1G16310			Cation efflux family protein (...		Potri.010G172600 [exp]	2.64	0.8201
AT5G24890			unknown protein		Potri.018G008200 [exp]	3.87	0.7978
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Potri.001G290600 [exp]	5.19	0.8255
AT4G31860			Protein phosphatase 2C family ...		Potri.001G043000 [exp]	5.47	0.8206
AT1G29730			Leucine-rich repeat transmembr...		Potri.011G073516 [exp]	7.74	0.8051
AT2G03500	GARP		Homeodomain-like superfamily p...		Potri.018G074200 [exp]	7.74	0.8322
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G096400 [exp]	7.74	0.8238
AT1G76040		CPK29	calcium-dependent protein kina...		Potri.005G245000 [exp]	16.00	0.8082

Compare expression of checked genes

Potri.008G153800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.