Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05440 301 / 3e-100 C-8 sterol isomerases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G086100 [exp] 584 / 0 AT1G05440 296 / 2e-98 C-8 sterol isomerases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041200 [exp] 288 / 4e-95 AT1G05440 242 / 4e-77 C-8 sterol isomerases (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G154400.1 pacid=42807304 polypeptide=Potri.008G154400.1.p locus=Potri.008G154400 ID=Potri.008G154400.1.v4.1 annot-version=v4.1 ATGAAAGCATACAGCACGATAACATCACTGTTCTCCATGAAATCAAGCGCCACCAACACTAACAACACGGCCATGGAAGAAAGAGATAGCTGTTACTTCC CTGGTTGCAGAAAAGGTGCCAATTGCAACTGTGATATTTGCTTAGCTAGCATCAATGCTACCCTGGACCTCATGCCAGTCAGCATTCAAAAGTCCTCTCT CACCAAGCTTTCTTCTTCACGCGCCAACGTGGAATGCTCTCCCCTTTCTTTTGATACTTCAGTTATCTCTACACCGAGATCAAGTTCTTGTCCTAAAATG GACTCTCCAACACTCAAATCAACAGCAAGATTGACTCTGGATCAAAAGAAAGAAAAGAAGAAAGAACCGCGGCCTTTTGGTTTTTGGGGTGTTTTTTTTA GCCTGGTTTGGGGATTAAGCTTGCTTTATGGTGTGGAAAATGGGTTTTCTTGGGGGGTTTGTAGGGTTTTAAGGCCTGCGTTTTCATCTGATATGATTAG AAGTATTGGTGAGAGATCTTGGGTTGTACAAGATTCGAATCGGAGGCTAAGGTTTTTGCAGAGTGAATTGAACGATTTTGTTGCCGATGGGAAGGTTTCA AATTGCAGCTTTATGAATTCAATATGGGAAATCAACAAGGATGGGCTGCTTTTGAATTCACGGTGCGTCTTGTACAAGTCAGCAGTGGAAGAGGTGAGCA TATGGGGCTGGCCTTTGCAAACTGGAGGATTGCTCAAAACAGAATTTTCTTCACGATCATTTACTGTGTTGTCAGGCAGAGTTACAGAGTGGTCTGACGG GAAGATTGGCTACTCAATTCGAAAAGCCAACACTTCTTGGGTTCACAGGAATTGGGCTGCCTCTGTTGTCCAATTAGATCCCAATACATGGATTCTGGAG TATGAGAGCAGGTTGGTGTTGGATAACTCAATCTTGTTTTCAGCAGTAGCAGGGGTCTTCAAATTCAGAATGTCACGAGCTCTGAAAAGCATGAATCCAG GATTCTGGTTGTTCTCTGATTTTGAGCGCCAATACAGTGTCTCTACAGTAAAAGACCGTGTCAAGATCATCCCAACTTAG
AA sequence Show only first row Show all	>Potri.008G154400.1 pacid=42807304 polypeptide=Potri.008G154400.1.p locus=Potri.008G154400 ID=Potri.008G154400.1.v4.1 annot-version=v4.1 MKAYSTITSLFSMKSSATNTNNTAMEERDSCYFPGCRKGANCNCDICLASINATLDLMPVSIQKSSLTKLSSSRANVECSPLSFDTSVISTPRSSSCPKM DSPTLKSTARLTLDQKKEKKKEPRPFGFWGVFFSLVWGLSLLYGVENGFSWGVCRVLRPAFSSDMIRSIGERSWVVQDSNRRLRFLQSELNDFVADGKVS NCSFMNSIWEINKDGLLLNSRCVLYKSAVEEVSIWGWPLQTGGLLKTEFSSRSFTVLSGRVTEWSDGKIGYSIRKANTSWVHRNWAASVVQLDPNTWILE YESRLVLDNSILFSAVAGVFKFRMSRALKSMNPGFWLFSDFERQYSVSTVKDRVKIIPT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05440			C-8 sterol isomerases (.1)		Potri.008G154400 [exp]	0	1
AT2G01210			Leucine-rich repeat protein ki...		Potri.004G095700 [exp]	3.74	0.7767
AT2G41540		GPDHC1	6-phosphogluconate dehydrogena...		Potri.016G043400 [exp]	4.89	0.6787
AT1G21695			hydroxyproline-rich glycoprote...		Potri.002G080200 [exp]	10.77	0.6933
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Potri.016G135400 [exp]	16.97	0.6734	Pt-LTP1.2
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.004G084233 [exp]	19.13	0.6678
AT2G41810			Protein of unknown function, D...		Potri.006G050400 [exp]	19.87	0.6704
AT3G02885		GASA5	GAST1 protein homolog 5 (.1)		Potri.017G124200 [exp]	23.06	0.6584	Pt-GASA5.2
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Potri.014G163000 [exp]	26.94	0.6084
					Potri.010G072200 [exp]	27.98	0.6563
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Potri.011G076500 [exp]	32.83	0.6418

Compare expression of checked genes

Potri.008G154400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.