Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22550 218 / 3e-70 Protein of unknown function (DUF581) (.1) AT5G11460 119 / 3e-31 Protein of unknown function (DUF581) (.1) AT3G63210 116 / 1e-30 MARD1 MEDIATOR OF ABA-REGULATED DORMANCY 1, Protein of unknown function (DUF581) (.1) AT2G25690 93 / 1e-21 Protein of unknown function (DUF581) (.1), Protein of unknown function (DUF581) (.2) AT1G22160 61 / 3e-11 Protein of unknown function (DUF581) (.1) AT4G39795 59 / 7e-11 Protein of unknown function (DUF581) (.1) AT1G74940 58 / 1e-09 Protein of unknown function (DUF581) (.1) AT1G78020 56 / 2e-09 Protein of unknown function (DUF581) (.1) AT5G49120 55 / 4e-09 Protein of unknown function (DUF581) (.1) AT5G65040 54 / 5e-09 Protein of unknown function (DUF581) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G085700 [exp] 524 / 0 AT3G22550 216 / 8e-69 Protein of unknown function (DUF581) (.1) Potri.005G211500 [exp] 254 / 5e-84 AT3G22550 182 / 4e-56 Protein of unknown function (DUF581) (.1) Potri.002G050800 [exp] 244 / 8e-80 AT3G22550 174 / 3e-53 Protein of unknown function (DUF581) (.1) Potri.001G179700 [exp] 125 / 2e-33 AT5G11460 141 / 1e-38 Protein of unknown function (DUF581) (.1) Potri.018G035400 [exp] 114 / 5e-29 AT5G11460 144 / 1e-39 Protein of unknown function (DUF581) (.1) Potri.006G245200 [exp] 110 / 2e-27 AT5G11460 144 / 2e-39 Protein of unknown function (DUF581) (.1) Potri.006G139200 [exp] 66 / 2e-12 AT5G20700 139 / 2e-40 Protein of unknown function (DUF581) (.1) Potri.005G168900 [exp] 61 / 2e-11 AT1G22160 142 / 2e-44 Protein of unknown function (DUF581) (.1) Potri.002G092900 [exp] 60 / 7e-11 AT1G22160 137 / 5e-42 Protein of unknown function (DUF581) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006102 [exp] 253 / 1e-83 AT3G22550 193 / 1e-60 Protein of unknown function (DUF581) (.1) Lus10010568 [exp] 249 / 8e-82 AT3G22550 187 / 2e-58 Protein of unknown function (DUF581) (.1) Lus10042606 [exp] 178 / 2e-54 AT3G22550 139 / 1e-39 Protein of unknown function (DUF581) (.1) Lus10022060 [exp] 166 / 1e-49 AT3G63210 133 / 1e-37 MEDIATOR OF ABA-REGULATED DORMANCY 1, Protein of unknown function (DUF581) (.1) Lus10012417 [exp] 116 / 1e-29 AT3G22550 140 / 4e-38 Protein of unknown function (DUF581) (.1) Lus10025770 [exp] 77 / 5e-16 AT3G22550 100 / 2e-24 Protein of unknown function (DUF581) (.1) Lus10035894 [exp] 73 / 1e-14 AT3G22550 98 / 1e-23 Protein of unknown function (DUF581) (.1) Lus10011923 [exp] 56 / 2e-09 AT1G74940 81 / 3e-19 Protein of unknown function (DUF581) (.1) Lus10027595 [exp] 56 / 5e-09 AT5G20700 76 / 1e-16 Protein of unknown function (DUF581) (.1) Lus10027642 [exp] 56 / 5e-09 AT1G74940 89 / 6e-22 Protein of unknown function (DUF581) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [poplar] [flax] TRASH PF04570 [poplar] [flax] zf-FLZ zinc-finger of the FCS-type, C2-C2
Representative CDS sequence Show only first row Show all	>Potri.008G154600.9 pacid=42808103 polypeptide=Potri.008G154600.9.p locus=Potri.008G154600 ID=Potri.008G154600.9.v4.1 annot-version=v4.1 ATGTCACAGCATAGCTCAATCCCATCTCCGACAGACAAGTTCAGAAAACCTACTTCATTTCCGAAATTGCTAACCGCCTTCACGTTCAAGAACTTCTCAG AAACGTCAGAGGCAATTATGAGCCCAACTTCAATTCTTGATAGCAAGCCCTTCTCAGGCCTCAAAAACCCCTTCTGGCCTGACCCAAACCCCAGTCCTAA AACCCCGGAACCTGAGACCAGGCGCCACTGGGACAAACTAGACGCGAAAGGCATTGGCCTTGGCATTGTTGATGCTCTTGATGATGAAAAAACTGACTCC AATTTGTCGAAACCAGAAAGCAGAACAGTTCTGTTTGGCTCACAACTAAAGATCCAAATCCCTCCCTTTCCCCCATCATTTCTTTCAACAACAGATCAAT CTCCCAAATCTCCAGGTGAATTTGGTATTAAAACAAGAAACTCTCAATTGGGTTCTTTCTCTTCTGGGTATTCCCCTTCCCCAGTGAAAAAATCATTATT CGGATCAGCTAATTCGGGTATGGAAACTCCTAATTCTCCCCGGGTCTTCGCCGGGTGTCTTTCTGCTAGTGAAATGGAGCTCTCTGAGGATTATACTTGT GTAATAACCCACGGGCCTGTTCCTAGAACTACTCATATTTTTGACAACTGCATTGTCGAGAGCTGCTGTGGTGTTGTTGGCTTCTCTACTTCTTTAAAGA AAGACAATAATAGATTTTTGGGTGATGGGTCAAGTTACCCGCCTAATAATTTCTTAAGCTTCTGCTCTGCTTGCAAGAACAATCTTGAGCAGGGAAAAGA CATTTACATGTACAGAGGGGAAAGAGCATTCTGCAGCAGTGAATGCCGGTACCAGGCGATGCAGTTAGAGGAGGGAATAGATGGAGTGGATCCAGATGAT GCTTAA
AA sequence Show only first row Show all	>Potri.008G154600.9 pacid=42808103 polypeptide=Potri.008G154600.9.p locus=Potri.008G154600 ID=Potri.008G154600.9.v4.1 annot-version=v4.1 MSQHSSIPSPTDKFRKPTSFPKLLTAFTFKNFSETSEAIMSPTSILDSKPFSGLKNPFWPDPNPSPKTPEPETRRHWDKLDAKGIGLGIVDALDDEKTDS NLSKPESRTVLFGSQLKIQIPPFPPSFLSTTDQSPKSPGEFGIKTRNSQLGSFSSGYSPSPVKKSLFGSANSGMETPNSPRVFAGCLSASEMELSEDYTC VITHGPVPRTTHIFDNCIVESCCGVVGFSTSLKKDNNRFLGDGSSYPPNNFLSFCSACKNNLEQGKDIYMYRGERAFCSSECRYQAMQLEEGIDGVDPDD A

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22550			Protein of unknown function (D...		Potri.008G154600 [exp]	0	1
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.004G235500 [exp]	1.00	0.8200
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073441 [exp]	4.00	0.8043
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073616 [exp]	4.24	0.8074
AT3G19870			unknown protein		Potri.008G085300 [exp]	4.35	0.7472
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Potri.006G138500 [exp]	4.47	0.8083	Pt-NPH4.2
AT5G17680			disease resistance protein (TI...		Potri.017G010800 [exp]	6.00	0.7881
AT1G09730			Cysteine proteinases superfami...		Potri.005G155600 [exp]	6.92	0.7816
AT1G02860		BAH1, NLA	nitrogen limitation adaptation...		Potri.014G130300 [exp]	7.74	0.7468
					Potri.005G163950 [exp]	11.83	0.7647
AT2G16485			nucleic acid binding;zinc ion ...		Potri.005G117300 [exp]	11.83	0.7912

Compare expression of checked genes

Potri.008G154600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.