Plant FIBer expression Database

Potri.008G154700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G22560 178 / 1e-57 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
AT2G32030 167 / 4e-53 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
AT2G32020 156 / 9e-49 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G154800
[exp]
215 / 6e-72 AT3G22560 225 / 3e-76 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Potri.010G085600
[exp]
180 / 4e-58 AT2G32030 223 / 6e-75 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Potri.007G102900
[exp]
109 / 8e-31 AT3G22560 96 / 9e-26 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021914
[exp]
219 / 1e-73 AT3G22560 216 / 2e-72 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Lus10039343
[exp]
178 / 3e-57 AT3G22560 151 / 1e-46 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Lus10010570
[exp]
174 / 7e-56 AT2G32030 220 / 7e-74 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Lus10039344
[exp]
170 / 4e-54 AT2G32030 236 / 4e-80 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Lus10010569
[exp]
163 / 2e-51 AT3G22560 144 / 7e-44 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Lus10006668
[exp]
157 / 8e-49 AT2G32030 122 / 2e-35 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Lus10032323
[exp]
134 / 2e-39 AT2G32030 107 / 6e-29 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Lus10041199
[exp]
118 / 1e-34 AT3G22560 128 / 7e-39 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Lus10007013
[exp]
123 / 9e-33 AT5G64300 506 / 4e-174 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1)
Lus10039346
[exp]
107 / 5e-30 AT2G32030 116 / 6e-34 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0257 Acetyltrans PF13302 Acetyltransf_3 Acetyltransferase (GNAT) domain
Representative CDS sequence
>Potri.008G154700.1 pacid=42806039 polypeptide=Potri.008G154700.1.p locus=Potri.008G154700 ID=Potri.008G154700.1.v4.1 annot-version=v4.1
ATGCCATCACCAATCCTTGCTGAGGAAATGGAGAACGATAGTTCATCGGAAGTAATTACTCTACGTCCTTATAAGGAATCCGATGCTGATGATTTCTTGG
GCTATGCAGGTGATGATCAAGTGACTCGATTCACCCGGTGGAACACTTTCAGCTGCAAGGAAGAAGCCCTCGTTTACATCAAGGACTTCTGCATTCCTCA
TCCATACTGCAGGTCTATATGTGTAAATGATCGTTCAATTGGATTTGTGTTTATCAGACAAGAATCTGGGGATGACAAATGCAGGGCAGAACTCGGATAT
GCTATAGCCGCTAAGTATTGGGGACAAGGTGTAACAACTAGAGCGTTGAAGATGGCAATCTCTGATGGGCTCAGGTCATTTCCTGATTTGGTTAGGCTTC
AAGCTAGGGTTGATGTGGAGAACAAAGCCTCTCAAAGGGTTTTGGAAAAACTGGGTTTCCTCAAGGAAGGGGTGCTGCGAAAGTATATGTATAACAAAGG
TAAGGTTATAGATTTGGTTGTCTATAGTCTGTTATCTACTGATCCCATGCCTTGA
AA sequence
>Potri.008G154700.1 pacid=42806039 polypeptide=Potri.008G154700.1.p locus=Potri.008G154700 ID=Potri.008G154700.1.v4.1 annot-version=v4.1
MPSPILAEEMENDSSSEVITLRPYKESDADDFLGYAGDDQVTRFTRWNTFSCKEEALVYIKDFCIPHPYCRSICVNDRSIGFVFIRQESGDDKCRAELGY
AIAAKYWGQGVTTRALKMAISDGLRSFPDLVRLQARVDVENKASQRVLEKLGFLKEGVLRKYMYNKGKVIDLVVYSLLSTDPMP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G22560 Acyl-CoA N-acyltransferases (N... Potri.008G154700
[exp]
0 1
AT5G18270 NAC ANAC087 Arabidopsis NAC domain contain... Potri.013G054200
[exp]
3.87 0.9167
AT1G78380 GST8, ATGSTU19 GLUTATHIONE TRANSFERASE 8, A. ... Potri.001G437000
[exp]
5.91 0.9339
AT3G46290 HERK1 hercules receptor kinase 1 (.1... Potri.001G234200
[exp]
6.32 0.8877
Potri.019G017300
[exp]
6.63 0.9122
AT2G24430 NAC ANAC039, ANAC03... Arabidopsis NAC domain contain... Potri.006G277000
[exp]
8.12 0.9292
AT5G66200 ARO2 armadillo repeat only 2 (.1) Potri.005G113000
[exp]
10.00 0.8637
AT3G24330 O-Glycosyl hydrolases family 1... Potri.018G072300
[exp]
12.72 0.8921
AT3G13600 calmodulin-binding family prot... Potri.001G006200
[exp]
14.00 0.8825
AT3G20340 unknown protein Potri.011G139400
[exp]
14.28 0.8772
AT5G50710 unknown protein Potri.012G101800
[exp]
14.83 0.8946

Potri.008G154700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.