Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PAFE902
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22590 385 / 2e-134 PHP, CDC73 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G085500 [exp] 450 / 5e-160 AT3G22590 555 / 0.0 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021913 [exp] 360 / 3e-125 AT3G22590 516 / 0.0 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1) Lus10041198 [exp] 361 / 7e-125 AT3G22590 547 / 0.0 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1) Lus10010571 [exp] 357 / 1e-123 AT3G22590 526 / 0.0 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1) Lus10039347 [exp] 282 / 3e-97 AT3G22590 295 / 2e-100 PLANT HOMOLOGOUS TO PARAFIBROMIN (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF05179 [poplar] [flax] CDC73_C RNA pol II accessory factor, Cdc73 family, C-terminal
Representative CDS sequence Show only first row Show all	>Potri.008G155000.3 pacid=42806808 polypeptide=Potri.008G155000.3.p locus=Potri.008G155000 ID=Potri.008G155000.3.v4.1 annot-version=v4.1 ATGTCTTTGATTTACGCCAATGAGACGCCGTTGAAGGATAGGGAGTCGTTGTTGGAGCGTAAGAGTAGGGATTTTTATGGGGTTTTGGTTGCGTCTACTC GGCGTGAAGAGGAGAGTCAGAGATTTGAGAGTCAACATAGGAAAGATGGGTTGGTGGCGAAGAGTAGGTTAATGGGAGCTGATGAGAGAGGAATCGGGTG TGGTGGTGATGAATTGGGTTATGATTCGGCAGCCAAGCCCAAAATGCATTTGAAAGGTAGGAAAATTAGGGAGGGAGTGCACATAATTTTGGTACCTAGC GCGTTTCAGACTTTGATTACAATTTATAATGTGAAGGAGTTTTTGGAAGATGGGATTTATATACCTACGGATGTGAAGGTTAAACAGATGAAAAGGCCGA AACCAGAGTGTGTAACAGTGCAGAAGAAGTTTAGTACTGATAGGAATAGAGTGATGACGGCTTATGAGGTGAGGGATAAGCCGTCTGCACTTAAAGCTGA TGATTGGGATAGGGTTGTGGCAGTTTTTGTGTTGGGGAAGGAGTGGCAATTCAAGGATTGGCCTTTTAAGGATCGTGTTGAGATATTTAATAAAATTATT GGATTTTTCATGCGGTTGGAAGATGATAGTGTAGAGTCAGCAAAGATTGTGAAGCAGTGGAATGTAAAGATTATCTCGATTAGCAAGAACAAGAGACACA AGGATAGAGCTGCAGCATTGGAGGTGTGGGACAGATTAGAAGAATTTATGCGCTCACGATCACACACTTGA
AA sequence Show only first row Show all	>Potri.008G155000.3 pacid=42806808 polypeptide=Potri.008G155000.3.p locus=Potri.008G155000 ID=Potri.008G155000.3.v4.1 annot-version=v4.1 MSLIYANETPLKDRESLLERKSRDFYGVLVASTRREEESQRFESQHRKDGLVAKSRLMGADERGIGCGGDELGYDSAAKPKMHLKGRKIREGVHIILVPS AFQTLITIYNVKEFLEDGIYIPTDVKVKQMKRPKPECVTVQKKFSTDRNRVMTAYEVRDKPSALKADDWDRVVAVFVLGKEWQFKDWPFKDRVEIFNKII GFFMRLEDDSVESAKIVKQWNVKIISISKNKRHKDRAAALEVWDRLEEFMRSRSHT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22590		PHP, CDC73	PLANT HOMOLOGOUS TO PARAFIBROM...		Potri.008G155000 [exp]	0	1	PAFE902
AT5G49555			FAD/NAD(P)-binding oxidoreduct...		Potri.007G025300 [exp]	3.16	0.7601
AT5G55100			SWAP (Suppressor-of-White-APri...		Potri.001G356800 [exp]	5.74	0.7691
AT3G14470			NB-ARC domain-containing disea...		Potri.004G194800 [exp]	14.42	0.7146	RGA.63
AT5G49980		AFB5	auxin F-box protein 5 (.1)		Potri.002G102700 [exp]	15.49	0.6560
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Potri.003G148501 [exp]	17.32	0.7391
AT3G23900			RNA recognition motif (RRM)-co...		Potri.001G319000 [exp]	21.79	0.7245
AT5G51410			LUC7 N_terminus domain-contain...		Potri.003G109000 [exp]	22.84	0.7160
AT5G19420			Regulator of chromosome conden...		Potri.003G197600 [exp]	26.83	0.6776
AT2G45880	BZR	BAM7, BMY4	BETA-AMYLASE 4, beta-amylase 7...		Potri.002G159300 [exp]	27.00	0.6753
AT5G05660		EBI, ATNFXL2	NFX1-like 2, EARLY BIRD, Arabi...		Potri.008G068500 [exp]	32.18	0.7155

Compare expression of checked genes

Potri.008G155000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.