Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32010 914 / 0 CVL1 CVP2 like 1 (.1.2) AT1G05470 874 / 0 CVP2 COTYLEDON VASCULAR PATTERN 2, DNAse I-like superfamily protein (.1) AT3G63240 702 / 0 DNAse I-like superfamily protein (.1) AT5G65090 407 / 3e-137 DER4, MRH3, BST1 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) AT2G37440 334 / 1e-109 DNAse I-like superfamily protein (.1.2) AT5G04980 331 / 6e-108 DNAse I-like superfamily protein (.1.2) AT4G18010 283 / 2e-87 AT5PTASE2, IP5PII INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) AT1G71710 284 / 3e-87 DNAse I-like superfamily protein (.1.2) AT2G01900 275 / 1e-86 DNAse I-like superfamily protein (.1) AT1G34120 274 / 2e-84 AT5PTASE1, ATIP5PI, AT5P1, IP5PI MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 1, inositol polyphosphate 5-phosphatase I (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G084300 [exp] 1080 / 0 AT2G32010 865 / 0.0 CVP2 like 1 (.1.2) Potri.002G050000 [exp] 841 / 0 AT3G63240 785 / 0.0 DNAse I-like superfamily protein (.1) Potri.005G212700 [exp] 826 / 0 AT3G63240 778 / 0.0 DNAse I-like superfamily protein (.1) Potri.010G247800 [exp] 445 / 1e-151 AT5G04980 552 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.008G011000 [exp] 424 / 8e-144 AT5G04980 534 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.005G078000 [exp] 417 / 7e-140 AT5G65090 666 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Potri.007G090200 [exp] 416 / 1e-139 AT5G65090 671 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Potri.001G145900 [exp] 380 / 1e-124 AT4G18010 615 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Potri.005G197800 [exp] 293 / 8e-91 AT1G71710 658 / 0.0 DNAse I-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039352 [exp] 979 / 0 AT2G32010 894 / 0.0 CVP2 like 1 (.1.2) Lus10006904 [exp] 706 / 0 AT3G63240 711 / 0.0 DNAse I-like superfamily protein (.1) Lus10006597 [exp] 625 / 0 AT2G32010 581 / 0.0 CVP2 like 1 (.1.2) Lus10014684 [exp] 618 / 0 AT3G63240 635 / 0.0 DNAse I-like superfamily protein (.1) Lus10042619 [exp] 612 / 0 AT3G63240 587 / 0.0 DNAse I-like superfamily protein (.1) Lus10033398 [exp] 423 / 1e-142 AT5G04980 540 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10034857 [exp] 419 / 1e-141 AT5G04980 530 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10028884 [exp] 398 / 1e-133 AT5G04980 526 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10028727 [exp] 375 / 6e-122 AT1G71710 674 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10011041 [exp] 369 / 1e-120 AT4G18010 655 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [poplar] [flax] DNase_I-like PF03372 [poplar] [flax] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Potri.008G155700.1 pacid=42806602 polypeptide=Potri.008G155700.1.p locus=Potri.008G155700 ID=Potri.008G155700.1.v4.1 annot-version=v4.1 ATGACAGATGGGAACTCCAAGAAAAGCAAGCTCTCCTGGTCCAAGAAAATGGTCAGAAAGTGGTTCAACATCAAGAGCAAAAATGAGGAATTTCAAGCTG ATGATGTTCACGGGGGTGAAGTTCAGTACAGGACTAGCTTCTCAGAGAGGGAGCCGTGTACAATAAAAAAGAGCAAAACAGAGAAATTTAGCAAGAATCC AGAGCAGGTCCGGCGGAACAGGATGAATCTTGACCATCCTCGTATCATAGACGTGCAAAACTACAGCATTTTTGTAGCTTCTTGGAATGTGGCTGGAAGA TCCCCTCTAAGTAATTTAAGTCTTGATGACTGGCTTCATGCTTCACCTCCAGCAGATATTTATGTTCTTGGATTTCAAGAGATAGTTCCTTTGAATGCTG GAAATGTTCTGGGTGCAGAAGATAATGGCCCTGCCAAAAAATGGCTGGCTCTCATCAGAAAGACTCTAAACAATCTTCCTGGAACTAGTGGAAGTGGTGG GTGCTATACACCGTCTCCAATCCCTGAGCCAATTGTAGAAATAGATGCTGATTTCGAGGGATCATCTAGACAAAAGAATGCTTCTTTCTTTCATCGCCGG TCATTCCAGACAACCAATAGCTGGAGAATGGACAATGATCCTTCAATTCCTCAGCCACGACTTGATCGGCGATTCAGTGTATGTGATCGGGTAATATTCG GTCACAGGCCAAGTGACTATGATCCTAGCAATAGATGGGGTCACAGACCTAGTGATTATTCCAGGCCCAGTGATTATTCCAGGCCTAGTGATTACTCCAG ATGGGGTTCCTCAGATGATGATAATGGGCCCGGGGAATCACCAAGTACTGTTTTATACTCACCAATGTCAAATGGAAATTCCTATTCTGCGTCTACCGAA GATGGATATAGGAGGCCAGGGCATTCAAGGTACTGCTTAGTGGCAAGCAAGCAAATGGTTGGCATATTCCTGACAATATGGGTGAGGAGTGATCTGAGGG AGCACGTCAAAAACATGAAAGTTTCTTGTGTTGGTAGAGGATTGATGGGTTACCTAGGAAATAAGGGATCTATTTCAGTCAGCATGTCCTTGCACCAAAC AAGCTTTTGCTTCATATGCAGCCATTTAACCTCTGGGCAGAAAGAAGGTGATGAGTTAAGAAGGAATGCAGATGTCATGGAGATTCTTAAGAAGACAAGA TTTCCGCGGGTTCATAACTCGGGTGATGAAAAGTCTCCAGAAACAATCCTTGAGCATGATCGAGTTATTTGGCTTGGGGATTTGAATTATCGTATTGCCC TGTCATATCGAGCTGCCAAGGCACTAGTTGAGATGCAAAACTGGAGAGCATTGTTAGAGAATGACCAGTTAAGGATAGAGCAGAGGCGAGGTCGTGTTTT TAGGGGATGGAGTGAGGGGAAAATTTATTTTCCACCAACCTACAAGTATTCAACCAATTCAGACAGATATGCAGGGGACGATATGCATCCCAAGGAGAAA CGTCGAACACCAGCTTGGTGCGATAGAATTTTGTGGCATGGAGAAGGCCTCCAACAATCATCTTATGTACGTGGGGAATCTCGGTTCTCAGATCATAGGC CTGTCTATGGCATATTTTGGGCAGAGGTTGAGTCGAGTCATGGTCCATTGAGGAAAAGCACTAGTTATTCTAGTTCCAGAATTGAGGTAGAGGAGCTTTT GCCGTACTCACATGGGTACACGGAACTAAACTTCTTTTGA
AA sequence Show only first row Show all	>Potri.008G155700.1 pacid=42806602 polypeptide=Potri.008G155700.1.p locus=Potri.008G155700 ID=Potri.008G155700.1.v4.1 annot-version=v4.1 MTDGNSKKSKLSWSKKMVRKWFNIKSKNEEFQADDVHGGEVQYRTSFSEREPCTIKKSKTEKFSKNPEQVRRNRMNLDHPRIIDVQNYSIFVASWNVAGR SPLSNLSLDDWLHASPPADIYVLGFQEIVPLNAGNVLGAEDNGPAKKWLALIRKTLNNLPGTSGSGGCYTPSPIPEPIVEIDADFEGSSRQKNASFFHRR SFQTTNSWRMDNDPSIPQPRLDRRFSVCDRVIFGHRPSDYDPSNRWGHRPSDYSRPSDYSRPSDYSRWGSSDDDNGPGESPSTVLYSPMSNGNSYSASTE DGYRRPGHSRYCLVASKQMVGIFLTIWVRSDLREHVKNMKVSCVGRGLMGYLGNKGSISVSMSLHQTSFCFICSHLTSGQKEGDELRRNADVMEILKKTR FPRVHNSGDEKSPETILEHDRVIWLGDLNYRIALSYRAAKALVEMQNWRALLENDQLRIEQRRGRVFRGWSEGKIYFPPTYKYSTNSDRYAGDDMHPKEK RRTPAWCDRILWHGEGLQQSSYVRGESRFSDHRPVYGIFWAEVESSHGPLRKSTSYSSSRIEVEELLPYSHGYTELNFF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32010		CVL1	CVP2 like 1 (.1.2)		Potri.008G155700 [exp]	0	1
AT5G59010			Protein kinase protein with te...		Potri.001G246400 [exp]	6.48	0.7864
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Potri.006G098300 [exp]	7.87	0.7730	PtrAUX1,AUX1.2
AT5G45540			Protein of unknown function (D...		Potri.007G123100 [exp]	8.94	0.8255
AT5G24318			O-Glycosyl hydrolases family 1...		Potri.015G010100 [exp]	15.87	0.8174
AT4G40060	HD	ATHB16 ,ATHB-16	homeobox protein 16 (.1)		Potri.005G161500 [exp]	16.73	0.7902
AT3G63380			ATPase E1-E2 type family prote...		Potri.013G040201 [exp]	18.16	0.7503
AT3G47570			Leucine-rich repeat protein ki...		Potri.016G114400 [exp]	19.44	0.7746
AT5G52900		MAKR6	MEMBRANE-ASSOCIATED KINASE REG...		Potri.015G026600 [exp]	20.49	0.7741
AT3G11690			unknown protein		Potri.016G066300 [exp]	22.51	0.7018
AT4G25835			P-loop containing nucleoside t...		Potri.001G231200 [exp]	23.74	0.8008

Compare expression of checked genes

Potri.008G155700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.