Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	HMT3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22740 485 / 2e-173 HMT3 homocysteine S-methyltransferase 3 (.1) AT3G63250 455 / 6e-162 HMT-2, ATHMT-2 ,HMT2 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2) AT3G25900 341 / 6e-117 HMT-1, ATHMT-1 Homocysteine S-methyltransferase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G083600 [exp] 566 / 0 AT3G22740 512 / 0.0 homocysteine S-methyltransferase 3 (.1) Potri.005G213100 [exp] 474 / 2e-169 AT3G63250 532 / 0.0 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2) Potri.002G049800 [exp] 466 / 4e-166 AT3G63250 512 / 0.0 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2) Potri.010G125200 [exp] 327 / 2e-111 AT3G25900 529 / 0.0 Homocysteine S-methyltransferase family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039356 [exp] 498 / 1e-178 AT3G22740 505 / 0.0 homocysteine S-methyltransferase 3 (.1) Lus10014686 [exp] 450 / 1e-159 AT3G63250 507 / 0.0 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2) Lus10006602 [exp] 439 / 1e-155 AT3G22740 455 / 7e-162 homocysteine S-methyltransferase 3 (.1) Lus10006901 [exp] 371 / 2e-129 AT3G63250 429 / 8e-153 HOMOCYSTEINE METHYLTRANSFERASE-2, homocysteine methyltransferase 2 (.1.2) Lus10041451 [exp] 332 / 5e-113 AT3G25900 521 / 0.0 Homocysteine S-methyltransferase family protein (.1.2.3) Lus10034320 [exp] 328 / 8e-112 AT3G25900 521 / 0.0 Homocysteine S-methyltransferase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02574 [poplar] [flax] S-methyl_trans Homocysteine S-methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.008G155900.1 pacid=42807440 polypeptide=Potri.008G155900.1.p locus=Potri.008G155900 ID=Potri.008G155900.1.v4.1 annot-version=v4.1 ATGGAAATGGGAATCGTTGAAACTTCGTCGAGGTTGATGACGGATTTCCTCCAGAAATGTGGTGGCTATGCTGTTGTTGATGGCGGCTTCGCCACTGAAC TTGAACGACATGGTGCTGACCTTAACGACCCTCTCTGGAGTGCCAAATGCCTCATCAGTTCTCCTCATCTTGTTAGAAAGGTTCACCTAGATTATCTTCA TGCTGGTGCAAACATCATAACAACAGCATCTTATCAGGCTACTATTCAGGGTTTTGTGGCTAAAGGTTTGTCTGAAGAAGAAGCTGAGTTGTTGCTTAGG AGAAGTGTTGAAATTGCATGCGAGGCAAGGGAAATTTACTATGACAAATGTACTACCAAAGGTTCTTTGGATTACATTGAAAGTGGAAATATCTCAAGGC GTCCTGTTTTAGTTGCTGCTTCCATTGGCAGCTATGGTGCTTATTTGGCCGATGGCTCCGAGTATAGTGGGAAATATGGTGATGCAGTTTCTCTAAGAAC ATTGAAGGATTTTCATAGGAGAAGGTTACAGATTCTAGCGAAATCAGGTGCTGACCTGATTGCGTTTGAGACAATTCCGAATAAGCTCGAGGCAAAGGCT TATGCTGAGCTTCTTGAGGAGGAAGAGATAAATATTCCAGCATGGTTCTCTTTTAATTCCAAGGATGGAATTAATGTGGTCAGTGGTGATTCCATCCTTG AGTGTGCCTCCATTGCAGATTCCTGCAAACGAGTTGTTGCTGTTGGAATCAATTGTACCCCTCCAAGATTTATCCATGGACTTGTTCTCTCCATCCAAAA GGCAACAAGTAAGCCAATAGTCATATATCCCAACAGCGGCGAGACGTACAATGCTGAGCTTAAGCAGTGGGTGAAATCAAGTGGAGTGGTAGTAGATGAA GACTTTGTCTCATACATAGGTAAGTGGCGTGAAGCCGGGGCTTCTCTATTTGGAGGCTGCTGCAGGACTACCCCAAATACCATCAGAGCTATAAGCAGGG TTCTCTCCAAATATCCTTAA
AA sequence Show only first row Show all	>Potri.008G155900.1 pacid=42807440 polypeptide=Potri.008G155900.1.p locus=Potri.008G155900 ID=Potri.008G155900.1.v4.1 annot-version=v4.1 MEMGIVETSSRLMTDFLQKCGGYAVVDGGFATELERHGADLNDPLWSAKCLISSPHLVRKVHLDYLHAGANIITTASYQATIQGFVAKGLSEEEAELLLR RSVEIACEAREIYYDKCTTKGSLDYIESGNISRRPVLVAASIGSYGAYLADGSEYSGKYGDAVSLRTLKDFHRRRLQILAKSGADLIAFETIPNKLEAKA YAELLEEEEINIPAWFSFNSKDGINVVSGDSILECASIADSCKRVVAVGINCTPPRFIHGLVLSIQKATSKPIVIYPNSGETYNAELKQWVKSSGVVVDE DFVSYIGKWREAGASLFGGCCRTTPNTIRAISRVLSKYP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22740		HMT3	homocysteine S-methyltransfera...		Potri.008G155900 [exp]	0	1	HMT3.1
AT3G43630			Vacuolar iron transporter (VIT...		Potri.002G069400 [exp]	1.41	0.9368
					Potri.010G015100 [exp]	5.00	0.8930
AT3G28960			Transmembrane amino acid trans...		Potri.008G086500 [exp]	7.74	0.9190
AT1G43650			nodulin MtN21 /EamA-like trans...		Potri.002G068300 [exp]	9.59	0.8955
AT1G19250		FMO1	flavin-dependent monooxygenase...		Potri.006G060300 [exp]	10.00	0.8499
AT5G56460			Protein kinase superfamily pro...		Potri.001G002300 [exp]	10.39	0.8434
AT1G64070		RLM1	RESISTANCE TO LEPTOSPHAERIA MA...		Potri.006G284000 [exp]	12.32	0.8883
AT1G20160		ATSBT5.2	Subtilisin-like serine endopep...		Potri.002G018600 [exp]	13.03	0.8328	Pt-SSTP.2
AT1G43650			nodulin MtN21 /EamA-like trans...		Potri.005G192100 [exp]	13.74	0.8878
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.019G014405 [exp]	13.85	0.8368

Compare expression of checked genes

Potri.008G155900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.