Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22750 608 / 0 Protein kinase superfamily protein (.1) AT4G14780 578 / 0 Protein kinase superfamily protein (.1) AT3G01490 536 / 0 Protein kinase superfamily protein (.1) AT5G50000 524 / 0 Protein kinase superfamily protein (.1) AT3G63260 509 / 0 ATMRK1 Protein kinase superfamily protein (.1.2) AT4G31170 242 / 2e-76 Protein kinase superfamily protein (.1.2.3.4) AT2G24360 231 / 2e-72 Protein kinase superfamily protein (.1) AT1G62400 214 / 3e-66 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT2G17700 219 / 4e-66 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT4G35780 218 / 1e-65 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G083500 [exp] 742 / 0 AT3G22750 601 / 0.0 Protein kinase superfamily protein (.1) Potri.002G049700 [exp] 617 / 0 AT3G22750 600 / 0.0 Protein kinase superfamily protein (.1) Potri.005G213200 [exp] 615 / 0 AT3G22750 575 / 0.0 Protein kinase superfamily protein (.1) Potri.012G079000 [exp] 541 / 0 AT5G50000 661 / 0.0 Protein kinase superfamily protein (.1) Potri.015G074400 [exp] 535 / 0 AT5G50000 654 / 0.0 Protein kinase superfamily protein (.1) Potri.017G072900 [exp] 531 / 0 AT3G01490 667 / 0.0 Protein kinase superfamily protein (.1) Potri.001G351300 [exp] 528 / 0 AT3G01490 664 / 0.0 Protein kinase superfamily protein (.1) Potri.018G001800 [exp] 243 / 2e-76 AT2G24360 663 / 0.0 Protein kinase superfamily protein (.1) Potri.006G279900 [exp] 241 / 5e-76 AT2G24360 642 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039357 [exp] 645 / 0 AT3G22750 611 / 0.0 Protein kinase superfamily protein (.1) Lus10006603 [exp] 630 / 0 AT3G22750 607 / 0.0 Protein kinase superfamily protein (.1) Lus10042622 [exp] 614 / 0 AT3G22750 605 / 0.0 Protein kinase superfamily protein (.1) Lus10022076 [exp] 552 / 0 AT3G22750 545 / 0.0 Protein kinase superfamily protein (.1) Lus10002368 [exp] 531 / 0 AT5G50000 659 / 0.0 Protein kinase superfamily protein (.1) Lus10042129 [exp] 530 / 0 AT5G50000 657 / 0.0 Protein kinase superfamily protein (.1) Lus10022227 [exp] 506 / 1e-179 AT3G01490 665 / 0.0 Protein kinase superfamily protein (.1) Lus10030621 [exp] 265 / 3e-85 AT3G01490 284 / 2e-92 Protein kinase superfamily protein (.1) Lus10030868 [exp] 243 / 4e-77 AT3G01490 253 / 3e-81 Protein kinase superfamily protein (.1) Lus10020374 [exp] 235 / 2e-73 AT4G31170 697 / 0.0 Protein kinase superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.008G156000.1 pacid=42806598 polypeptide=Potri.008G156000.1.p locus=Potri.008G156000 ID=Potri.008G156000.1.v4.1 annot-version=v4.1 ATGGATTCAAAAACAAGCGGTGAGGCTGGTGATGTCATGCCAGAGAAGAAACCGGATAGCCAGGAAGGTAGTGCCAATTCAAAGGTGAAAGGTATTGGAG GTGTGAGTAGCAAAGATATGTTTTTTCGAGCTGATAAAATCGATCTCAAAAGCTTGGATGCACAGCTTGAGAAGCACCTGAGCAGGGTTTGGTCAAGGAA CACCGAAATCCAAAGGCCTAAAGAAGAGTGGGAAATTGATTCGTCTAAATTGGAAATAAGGCACGAGGTAGCCCGTGGTACTTTTGGGACCGTGTATCGT GGTACTTATGATAACCAAGATGTTGCAGTGAAAATGTTGGACTGGGGGGAGGATGGTATTGCCACAACTGCTGAAACCACTGCTGTGCGGGCATCATTTC AGCAAGAGGTTGCTGTCTGGCACAAGCTTGACCATCCTAATGTTACAAAATTTGTTGGAGCATCAATGGGAACTTCAAACCTGAAAATTCCTGCCAAAAA CCCATCTGATGGTTACATCTCCCTTCCTGCTAGGGCATGCTGTGTTGTTGTTGAGTATCTCCCTGGTGGGACGCTTAAACACTACTTGATAAGAAATAGT CGAAAAAAACTTGCTTTTAAGGTTGTGATCCAACTTGCTTTGGATCTCTCTAGGGGTCTTAGCTATCTACATTCAAAGAAGATAGTACATCGTGATGTCA AGACTGAAAACATGTTACTAGATTCTCATAGAAATCTCAAAATTGCTGATTTTGGTGTTGCCCGTGTTGAAGCTCAGAATCCATGTGACATGACTGGTGA AACTGGCACACTTGGATACATGGCCCCAGAGGTTCTTGATGGCAAACCGTATAACAGAAGATGTGATGTCTACAGCTTTGGCATCTGCTTATGGGAAATA TATTGTTGTGACATGCCTTACCCTAATCTTAGCTTCGCTGATGTCTCCTCTGCTGTTGTTCGACAGAATTTACGGCCAGAGATTCCAAGATGTTGTCCAA GTTCTTTAGCAAATGTCATGCGAAAATGCTGGGATGGAAATGCAGAAAAACGTCCTGAAATGGCTGAGGTGGTGAAAATGTTAGAAGCGGTTGATACAAG CAAGGGAGGAGGGATGATACCTGAAGACCAGGCATCTGTCTGTTTCTGTTTGACCCCTGCTCGCGGACCCTAA
AA sequence Show only first row Show all	>Potri.008G156000.1 pacid=42806598 polypeptide=Potri.008G156000.1.p locus=Potri.008G156000 ID=Potri.008G156000.1.v4.1 annot-version=v4.1 MDSKTSGEAGDVMPEKKPDSQEGSANSKVKGIGGVSSKDMFFRADKIDLKSLDAQLEKHLSRVWSRNTEIQRPKEEWEIDSSKLEIRHEVARGTFGTVYR GTYDNQDVAVKMLDWGEDGIATTAETTAVRASFQQEVAVWHKLDHPNVTKFVGASMGTSNLKIPAKNPSDGYISLPARACCVVVEYLPGGTLKHYLIRNS RKKLAFKVVIQLALDLSRGLSYLHSKKIVHRDVKTENMLLDSHRNLKIADFGVARVEAQNPCDMTGETGTLGYMAPEVLDGKPYNRRCDVYSFGICLWEI YCCDMPYPNLSFADVSSAVVRQNLRPEIPRCCPSSLANVMRKCWDGNAEKRPEMAEVVKMLEAVDTSKGGGMIPEDQASVCFCLTPARGP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22750			Protein kinase superfamily pro...		Potri.008G156000 [exp]	0	1
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Potri.013G143900 [exp]	2.44	0.7966	FGT1
AT1G53120			RNA-binding S4 domain-containi...		Potri.011G119800 [exp]	5.29	0.7377
AT1G17200			Uncharacterised protein family...		Potri.001G436400 [exp]	6.32	0.7900
AT1G25682			Family of unknown function (DU...		Potri.008G115700 [exp]	8.12	0.7282
AT5G17990		PAT1, TRP1	PHOSPHORIBOSYLANTHRANILATE TRA...		Potri.012G082700 [exp]	17.54	0.7700
AT3G52740			unknown protein		Potri.009G164000 [exp]	20.78	0.6962
AT1G67370		ASY1, ATASY1	ASYNAPTIC 1, DNA-binding HORMA...		Potri.001G055201 [exp]	23.36	0.7948
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Potri.005G093800 [exp]	24.85	0.7885
AT4G32870			Polyketide cyclase/dehydrase a...		Potri.008G063900 [exp]	27.71	0.7777
AT5G41210		GSTU12, GST10, ...	glutathione S-transferase THET...		Potri.001G105600 [exp]	31.52	0.6972	ATGSTT1.3

Compare expression of checked genes

Potri.008G156000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.