Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22790 761 / 0 Kinase interacting (KIP1-like) family protein (.1) AT4G14760 695 / 0 kinase interacting (KIP1-like) family protein (.1) AT1G03080 464 / 3e-139 kinase interacting (KIP1-like) family protein (.1) AT4G02710 147 / 1e-35 Kinase interacting (KIP1-like) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G083300 [exp] 1813 / 0 AT3G22790 1306 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.002G049600 [exp] 672 / 0 AT1G03080 1229 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.005G213400 [exp] 635 / 0 AT1G03080 1399 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.002G091700 [exp] 49 / 3e-05 AT1G22060 1546 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039359 [exp] 1102 / 0 AT3G22790 1402 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10006606 [exp] 502 / 3e-163 AT3G22790 368 / 3e-111 Kinase interacting (KIP1-like) family protein (.1) Lus10022079 [exp] 517 / 6e-158 AT1G03080 1179 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10041192 [exp] 417 / 7e-124 AT4G14760 744 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10021908 [exp] 402 / 2e-118 AT4G14760 710 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10014687 [exp] 255 / 6e-69 AT1G03080 938 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10006896 [exp] 245 / 1e-65 AT1G03080 927 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10042627 [exp] 150 / 1e-36 AT4G02710 624 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10006607 [exp] 120 / 4e-31 AT1G03080 83 / 5e-19 kinase interacting (KIP1-like) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G156200.4 pacid=42808687 polypeptide=Potri.008G156200.4.p locus=Potri.008G156200 ID=Potri.008G156200.4.v4.1 annot-version=v4.1 ATGAAAGAGAAACTTGAAGAGGATGTTTCCCTACAAGCTGCACAGAGCAATTCCCTACAGCAAGAGATTTTCCATTTGAAGGAGGAAATTGAGGGCTTGA GTACAAGATATTGGATTTTAATGGAGCAAGTGGACTCGGTAGGTTTAAATCCAGAGTGCCTTGGCTCATCTGTGAAGAACTTGCAAGATGAAAACTTGAA ACTAAAAGAGGTCTGCAAAAAGGACACAGAAGAAAAGGAAGTTCTCCATGAAAAGTTGAGCACAATGAATAACATTAAGGAGAACAATGTTGCACTGGAG AGGTCCCTCTCAGATTTGAATCGCATGCTGGAAGGGTCAAGAGAGAAGGTTAAAGAGTTGCAGGAGTCCTCCCAGTTTCTTCAGGGAGAAAAATCCAGTC TTGTTGCTGAAAAATCCATCCTGCTTTCTCAGTTACAGATGATGACAGAGAATTTGCAGAAGCTCTCGGAGAAAAATGCCTTGCTGGAGAATTCTCTCTC TGGTGCAACTATTGAGCTCGAAGGTCTGAGGACAAGGTCAAGAAGCTTAGAAGAATTCTGCCAGACGCTAAAAAATGAGAAATCCAATCTTGAAGATGAA AGAAGCTCCCTGGTCTTACAGCTGAAAAATGTTGAAGAGAGACTGGGAAACCTAGAAAGGAGATTTACAAGATTAGAAGAAAAATACACTGATCTGGAGA AGGAAAATGATTCTACACATTCTCAAGTAAAGGACATGTGGGGTTTTCTTGGTGTAGAAAAACAAGAGCGCTCATGTTATATACAGTCAAGTGAATCTCG ACTTGCAGATCTGGAAAGCCAGGTCCATCAACTACATGAAGAAAGTAGGTCGAGCAAGAAAGAATTCGAAGAAGAACTGGATAAAGCTGTAAATGCTCAG GTTGAAATCTTCATCTTGCAGAAGTTTATTAAAGATTTAGAAGAGAAGAATTTGTCCCTGTTGATTGACTGTCAGAAACATGTCGAAGCATCCAAATTCT CAGATAAACTGATATCAGAATTAGAGACTGAAAATCTTGAGCAGCAGGCTGAAGTAGAATTCTTGTTAGATGAAATTGAAAAGCTTAGAATGGGTGTTCG TCAAGTTTTGAGGGCTCTTCAATTTGATCCAGTTAATGAGCATGAAGATGGGAGTCTTGCATGTATTTTGGACAATATCGGTGACCTAAAAAGTTTGCTC CTTTTAAAGGAGGATGAGAAACAGCAGTTGGTGGTCGAGAATTTGGTGTTGTTAACTTTACTCGAACAACTGAGATTAGATGGTGTTGAGCTTGAGACAG AGAAAAGCATCATAGAGCAGGAGTTCAAGATAATGGTAGAGCAACATACTATGCTGGAAAAAAGTAACCACGAACTGCTAGAGATGAACAGGCAATTGAG ATTGGAAGTGAGCAAAGGAGAGCAGCAGGATGAGGAATTGAAAGCTCAACTTGAAACCCAGCATTTGAATCTGGCGAGTTTGCAGGGTTCGTCCGTGCAA TTGAAAGAAGAAAATCTGAAGGTGCTTGGAGAAAACAGGTCTTTGCTTCGGAAAGTTTTGGACCTCAAAGAGGAAATGCATGTACTTGAAGAGGAAAACA GTAGCATTCTCCAGGAAGCTGTAACTGTCAGTAACCTCTCATCGGTGTTTGAGAGCTTTGCGGCAGAGAAAGTTGAGGAACTCGAATCCCTTTCTGAAGA TATCAGCTTTCTAAACTTGATGAACAGTGATCTCAAGCAGAAGGTTGAAATGTTGGGGGATAAACTGTTATCAAAAGAATCAGAAAATCTACATCTTGAT AAAAGAATTGAAGAGTTGCAGCAGGAACTGCAGGAAGAAAAAGACTTAACAGATCAATTAAACTGTCAAATTGTAATTGAAAAAGATTTTCTTCGAGAGA AAGCAACGGAGCTTTTCCTAGCGGAACAAAATATCACAGCTACCAACAACTTAAATGCAGAATTTCACACCACTATTGAGGAGCTTAAGAGGCAATGTGA AGCATCAAAAGTTGCAAGAGAGAACATAGATAAGCGGATTCTTGAACTGTCCCAAGTTTGCACAGATCAGAAAATAGAGATTGAATGCCTTAGTGAAGCA AAAGACGATCTGGAGTCAGAAATGGCTACATTGCTCAAGGAAATCAAGGAAAGACAGACTAGGGAAGAGAACTTGAGTTTGGAGCTGCAAGAAAGAAGCA ACGAGACTGAACTCTGGGAAGCTGAGGCTTCGTCATTCTTCTTTGATCTTCAAATATCTTCTATCCACGAAGTTCTGCTTCAAAACAAGGTTCGTGAGCT GACTGTAGTTTGTGGGAGTCTTGAAGAAGAAAATGGTAAAAAAGATATTGAGATTGAAAAAATGAAAGAAAGGTTTGGCAAACTGGAAAGCGAAATTCAA AGAATGAAGGCTCATTTGTCTGCATATGTTCCGGTCATAACTTCACTGAGAGAGAATATAGAATATCTTGAGCACAATGTGCTTCTTCAGACAAGTCGAG GACAAAAGGGAGTAGAAATGACTAGTCAACATCATGAAAAGAGTCCTGAAGAACTCATAAATGATGAAAGCGTTGCAGTAACAGATGGAATTTCAGATTT GCTGAAGATGAAGTCTAGAATTAACGCAGTGGGTGAGGCAGTGGTTAAAGAAATGGATAGGCTTGCAGCTGAAAAGGCAATGTTGAAAGAAATGGATAGG CTTAAAATGCAGGAAATGGGGAACACTGAGGAGCCCTTAATGAAAGGGGCTGAACATTTAGAGATGAGAGGCCGATCAGCTGCAGAAAAGGATGTCCAGA AGGATGAGATGGAACTTGCAAATAAGCCCACTGATGCAGCTAAGCCACAGAACAACAAATCTGAAATTTCTGAAGTGAGGAATGAGATTTTGATGAAAGA TATCCCACTTGATCAGGTCTCGGAATGTTCATTATACAGGAGAAGCAAGAGAGAGCATGCTGGGAAAGATGATCGGATGCTTGAATTATGGGAATCTGCT GAGCAAGACTGCCTTGATCCGCTTGCTGACAAACAGAAGCCGACAGCCCCTATTGAGAATGTTGCTGCATGTTGTCAGTTCAAAAATGCCAAACGGAAGA GTCAGGATCCCTCTTTGGAATTGCAGATTGAGAAGGAAGTGGGCATTGACAAGCTTGAGGTATCAACAAGCATCACTAGAGAACCCAATCAAGAAGGAAA CAGAGGAAAGATCTTGGAGAGGCTTGCTTCTGATGCTCAGAAATTAATTTCGCTTCAAATAACAGTGCAAGATTTGAAAACGAAAATGGAGTTGAGGAAG AGAGGCAAGAGGGCCAATGATCTTGAATTTGAAAGAGTGAAAAGACAGTTACAAGAAGTTGAGGAGGCTGTTCTGCAGTTGGTTGATACTAATGATCAGC TGACCAAGGATGTTGAAGAGAGTCCCCCATATTTGGAGGGGAACACTTCAGTAGAGATGGAAGAGACAGGCACCATGCACAGAAAAAGAGTGGCAGAACA AGCACGGAAAAGGTCTGAAAAGATCGGAAGGTTACAGTTTGAGGTGCAGAGTATCCATTACATTCTGCTAAAACTGGAGGATGAAAAGAAAAGCAAAAGT AAGCACAAATTTTCTGGAAGTAAAACAGGCATCCTCTTGAGAGACTTCATATACAGCGGTGGCAGGAGAAGCAGCAGAAGGCAGAAGAAGGGTTGCTTTT GTGGGTGTGCAAGACCTTCATCTAATGAAGACTGA
AA sequence Show only first row Show all	>Potri.008G156200.4 pacid=42808687 polypeptide=Potri.008G156200.4.p locus=Potri.008G156200 ID=Potri.008G156200.4.v4.1 annot-version=v4.1 MKEKLEEDVSLQAAQSNSLQQEIFHLKEEIEGLSTRYWILMEQVDSVGLNPECLGSSVKNLQDENLKLKEVCKKDTEEKEVLHEKLSTMNNIKENNVALE RSLSDLNRMLEGSREKVKELQESSQFLQGEKSSLVAEKSILLSQLQMMTENLQKLSEKNALLENSLSGATIELEGLRTRSRSLEEFCQTLKNEKSNLEDE RSSLVLQLKNVEERLGNLERRFTRLEEKYTDLEKENDSTHSQVKDMWGFLGVEKQERSCYIQSSESRLADLESQVHQLHEESRSSKKEFEEELDKAVNAQ VEIFILQKFIKDLEEKNLSLLIDCQKHVEASKFSDKLISELETENLEQQAEVEFLLDEIEKLRMGVRQVLRALQFDPVNEHEDGSLACILDNIGDLKSLL LLKEDEKQQLVVENLVLLTLLEQLRLDGVELETEKSIIEQEFKIMVEQHTMLEKSNHELLEMNRQLRLEVSKGEQQDEELKAQLETQHLNLASLQGSSVQ LKEENLKVLGENRSLLRKVLDLKEEMHVLEEENSSILQEAVTVSNLSSVFESFAAEKVEELESLSEDISFLNLMNSDLKQKVEMLGDKLLSKESENLHLD KRIEELQQELQEEKDLTDQLNCQIVIEKDFLREKATELFLAEQNITATNNLNAEFHTTIEELKRQCEASKVARENIDKRILELSQVCTDQKIEIECLSEA KDDLESEMATLLKEIKERQTREENLSLELQERSNETELWEAEASSFFFDLQISSIHEVLLQNKVRELTVVCGSLEEENGKKDIEIEKMKERFGKLESEIQ RMKAHLSAYVPVITSLRENIEYLEHNVLLQTSRGQKGVEMTSQHHEKSPEELINDESVAVTDGISDLLKMKSRINAVGEAVVKEMDRLAAEKAMLKEMDR LKMQEMGNTEEPLMKGAEHLEMRGRSAAEKDVQKDEMELANKPTDAAKPQNNKSEISEVRNEILMKDIPLDQVSECSLYRRSKREHAGKDDRMLELWESA EQDCLDPLADKQKPTAPIENVAACCQFKNAKRKSQDPSLELQIEKEVGIDKLEVSTSITREPNQEGNRGKILERLASDAQKLISLQITVQDLKTKMELRK RGKRANDLEFERVKRQLQEVEEAVLQLVDTNDQLTKDVEESPPYLEGNTSVEMEETGTMHRKRVAEQARKRSEKIGRLQFEVQSIHYILLKLEDEKKSKS KHKFSGSKTGILLRDFIYSGGRRSSRRQKKGCFCGCARPSSNED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22790			Kinase interacting (KIP1-like)...		Potri.008G156200 [exp]	0	1
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Potri.005G105600 [exp]	1.73	0.7801
AT5G20060			alpha/beta-Hydrolases superfam...		Potri.018G030200 [exp]	2.44	0.7594
AT3G61590		HWS, HS	HAWAIIAN SKIRT, Galactose oxid...		Potri.014G093200 [exp]	12.96	0.6809
AT5G36930			Disease resistance protein (TI...		Potri.002G056100 [exp]	13.71	0.7193
AT3G22790			Kinase interacting (KIP1-like)...		Potri.010G083300 [exp]	17.66	0.7567
AT3G54390	Trihelix		sequence-specific DNA binding ...		Potri.003G195300 [exp]	22.73	0.6492
AT2G33360			Protein of unknown function (D...		Potri.010G066200 [exp]	25.29	0.6975
AT5G52870		MAKR5	MEMBRANE-ASSOCIATED KINASE REG...		Potri.015G027500 [exp]	26.53	0.6593
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Potri.006G231000 [exp]	28.67	0.7097
AT1G32960		ATSBT3.3	Subtilase family protein (.1)		Potri.001G450600 [exp]	29.66	0.6806

Compare expression of checked genes

Potri.008G156200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.