Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22790 519 / 1e-167 Kinase interacting (KIP1-like) family protein (.1) AT4G14760 481 / 1e-153 kinase interacting (KIP1-like) family protein (.1) AT4G02710 452 / 2e-147 Kinase interacting (KIP1-like) family protein (.1) AT1G03080 454 / 7e-144 kinase interacting (KIP1-like) family protein (.1) AT2G22560 154 / 2e-39 Kinase interacting (KIP1-like) family protein (.1) AT1G09720 147 / 3e-37 Kinase interacting (KIP1-like) family protein (.1) AT2G30500 142 / 2e-36 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) AT5G10500 142 / 1e-35 Kinase interacting (KIP1-like) family protein (.1) AT5G58320 132 / 9e-33 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) AT2G47920 107 / 2e-26 Kinase interacting (KIP1-like) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G083300 [exp] 798 / 0 AT3G22790 1306 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.005G213400 [exp] 507 / 5e-163 AT1G03080 1399 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.002G049600 [exp] 494 / 5e-158 AT1G03080 1229 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.007G011300 [exp] 149 / 6e-38 AT2G22560 851 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.005G147300 [exp] 149 / 1e-37 AT2G22560 421 / 2e-131 Kinase interacting (KIP1-like) family protein (.1) Potri.002G106400 [exp] 148 / 1e-37 AT1G58210 702 / 0.0 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) Potri.013G158100 [exp] 147 / 1e-37 AT2G30500 384 / 7e-127 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.019G131000 [exp] 146 / 2e-37 AT2G30500 389 / 4e-129 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.002G207700 [exp] 115 / 1e-27 AT2G47920 136 / 2e-37 Kinase interacting (KIP1-like) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039359 [exp] 683 / 0 AT3G22790 1402 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10014687 [exp] 431 / 7e-136 AT1G03080 938 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10006896 [exp] 422 / 1e-132 AT1G03080 927 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10042627 [exp] 403 / 3e-130 AT4G02710 624 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10041192 [exp] 395 / 2e-123 AT4G14760 744 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10021908 [exp] 387 / 1e-120 AT4G14760 710 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10022079 [exp] 359 / 3e-109 AT1G03080 1179 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10002655 [exp] 144 / 6e-36 AT2G22560 511 / 9e-164 Kinase interacting (KIP1-like) family protein (.1) Lus10035944 [exp] 142 / 2e-35 AT5G10500 280 / 3e-78 Kinase interacting (KIP1-like) family protein (.1) Lus10025717 [exp] 140 / 1e-34 AT2G22560 497 / 6e-158 Kinase interacting (KIP1-like) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07765 [poplar] [flax] KIP1 KIP1-like protein
Representative CDS sequence Show only first row Show all	>Potri.008G156250.1 pacid=42806809 polypeptide=Potri.008G156250.1.p locus=Potri.008G156250 ID=Potri.008G156250.1.v4.1 annot-version=v4.1 ATGGCAACACTATTACATTCCGAGTCCAGAAGATTATATTCTTGGTGGTGGGACAGCCACATTAGCCCAAAGAATTCGAAATGGCTTCAAGAAAATCTCA CAGATATGGATGCCAAAGTCAAAGCAATGATCAAGGTCATTGAAGAAGATGCCGATTCTTTTGCAAGGAGGGCAGAAATGTACTATAAGAAGCGTCCTGA ACTGATGAAACTGGTGGAGGAATTCTACAGAGCTTACCGTGCATTAGCAGAGAGATATGATCATGCAACCGTGGAGCTCCGCCAGGCTCATCGAACAATG GCAGAAGCATTTCCCAACCAAGTACCATATGTACTGGTTGATGATTCACCTTCAGGATCTTCTGGCCCCGAGGGTGAGCCGCATTCTCTAGAAATGCCAC ATCCCATTCGTGCATTTCTTGACCCAGATGACTTGCGTATGGATTCATTGGGACTCTCTATTAACAAAACAGGTTTAAAGCAGCTCAATGAGTTGTTTGG CTCACGAGATGCAGTATCTCAAGTTTCAAAAGTTGCAGATGGAAAATTGAAAAAATGCCTGAAGATTCATGAAGCAGCAGAGGTTGACACCGGAAAGCAA GCTGAAACTGAAGTTCAAATCATAAAGAAAGCTCTTTCAGAGATTCAAACTGAGAAGGAAGCTGTTCTTCTTCAATACCAGCAGAGCTTGCAGAAGTTAT CCAGCTTGGAGAGAGAACTAAATGATTTCAGAGGGATTGATGAAAGAGCAGGCAAAGCAGAAATTGAAATTAAGATCCTGAAGGAAACCCTTGTTAAATT AGAAGCTGAAAGGGATGCTGGTCTTCTACAGTACAACAAATGCTTGGAAAGAATATCTGCTTTAGAGAATGTGATCTCTAAAATGGAAGAGGACGCAAAA GCTCTCAATGAACGAGCTATTAAAGCTGAAATAGAAGCTCAAAATCTCAAGCAAGAACTTTCAGGATTAGAGGCTGAAAAGGAAGCTAGTCTTCTTCAGT ACAACCAATGTCTTGAACTGATATCCAATTTGCAGAAGAAAATCTTGATTGCGGAGGAAAATGCTAGAATGCTCAATGCATTAACCGAAACAGCAGAAAC TGAAGCTAAAGCATTGAAGGAGGCCCTCGCTAAATTGAGCGAAGAGAAAGAAGCTGCAGAACTTCAGTATGAGCTGTGTTTGGAGAAAATAGCTATGATG GAGAGTGAAGTTTCTCATGCTCAGGAGGACGTCAATCGACTAAACAGTGAAATTCTGTCAGGGACTGCGAAATTGAAAACCGTAGAAGAACAGTGTTTCC TGTTACAGAGATCAAATCAATCTCTGCAGTCAGAGGCAGATACTCTAGTACAGAAGATAGAAACAAAGGATCAAGAACTTTCAGAGAAGGTAAATGAGTT GGAGAAGCTTCAGGCTTCGCTGCAAGATGAGCAGTCACAGTTTCTTCAAGTTGAAGCCACTTTGCACTCATTGCAGAAATTGCACTCTCAATCTCAAGAG GAGCAGAGAGCTTTGGCAATTGAGCTTCAGAATCACTTCCAAATGTTGAAGGATTTAGAGATATCCAACCATGATCTGCAGGAGAACCTTCAACAGGTTA AGGAAGAGAACCAGAACCTCCATGAATTGAACAGTAATTCCGTTATTTCAATAACAGATTTGAAAAATGAAATTTTAGCTTGA
AA sequence Show only first row Show all	>Potri.008G156250.1 pacid=42806809 polypeptide=Potri.008G156250.1.p locus=Potri.008G156250 ID=Potri.008G156250.1.v4.1 annot-version=v4.1 MATLLHSESRRLYSWWWDSHISPKNSKWLQENLTDMDAKVKAMIKVIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYDHATVELRQAHRTM AEAFPNQVPYVLVDDSPSGSSGPEGEPHSLEMPHPIRAFLDPDDLRMDSLGLSINKTGLKQLNELFGSRDAVSQVSKVADGKLKKCLKIHEAAEVDTGKQ AETEVQIIKKALSEIQTEKEAVLLQYQQSLQKLSSLERELNDFRGIDERAGKAEIEIKILKETLVKLEAERDAGLLQYNKCLERISALENVISKMEEDAK ALNERAIKAEIEAQNLKQELSGLEAEKEASLLQYNQCLELISNLQKKILIAEENARMLNALTETAETEAKALKEALAKLSEEKEAAELQYELCLEKIAMM ESEVSHAQEDVNRLNSEILSGTAKLKTVEEQCFLLQRSNQSLQSEADTLVQKIETKDQELSEKVNELEKLQASLQDEQSQFLQVEATLHSLQKLHSQSQE EQRALAIELQNHFQMLKDLEISNHDLQENLQQVKEENQNLHELNSNSVISITDLKNEILA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22790			Kinase interacting (KIP1-like)...		Potri.008G156250 [exp]	0	1
AT3G50370			unknown protein		Potri.007G043300 [exp]	13.52	0.7170
AT4G00990			Transcription factor jumonji (...		Potri.015G012800 [exp]	31.11	0.6619
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Potri.006G222500 [exp]	65.51	0.5779
AT1G30650	WRKY	ATWRKY14, AR411...	WRKY DNA-binding protein 14 (....		Potri.001G460600 [exp]	65.58	0.6147	Pt-WRKY14.2
AT3G60860			SEC7-like guanine nucleotide e...		Potri.002G149200 [exp]	73.89	0.5754
AT1G13220		CRWN2, LINC2	LITTLE NUCLEI2, CROWDED NUCLEI...		Potri.008G114800 [exp]	89.64	0.6089
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Potri.005G200400 [exp]	97.34	0.5907
AT5G51950			Glucose-methanol-choline (GMC)...		Potri.012G135200 [exp]	126.33	0.5031
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Potri.001G105800 [exp]	129.45	0.5759
AT4G19112		CPuORF25	conserved peptide upstream ope...		Potri.003G101650 [exp]	135.53	0.5324

Compare expression of checked genes

Potri.008G156250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.