Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RS3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04840 413 / 9e-148 Ribosomal protein S3Ae (.1) AT4G34670 412 / 4e-147 Ribosomal protein S3Ae (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G083200 [exp] 462 / 3e-167 AT3G04840 407 / 2e-145 Ribosomal protein S3Ae (.1) Potri.005G051200 [exp] 422 / 2e-151 AT4G34670 418 / 1e-149 Ribosomal protein S3Ae (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006609 [exp] 422 / 3e-151 AT4G34670 441 / 1e-158 Ribosomal protein S3Ae (.1) Lus10039360 [exp] 420 / 3e-150 AT4G34670 439 / 6e-158 Ribosomal protein S3Ae (.1) Lus10041191 [exp] 375 / 5e-133 AT4G34670 392 / 2e-139 Ribosomal protein S3Ae (.1) Lus10021907 [exp] 375 / 7e-133 AT4G34670 390 / 7e-139 Ribosomal protein S3Ae (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01015 [poplar] [flax] Ribosomal_S3Ae Ribosomal S3Ae family
Representative CDS sequence Show only first row Show all	>Potri.008G156300.2 pacid=42806011 polypeptide=Potri.008G156300.2.p locus=Potri.008G156300 ID=Potri.008G156300.2.v4.1 annot-version=v4.1 ATGGCCGTTGGGAAGAACAAGAGAATTTCCAAGGGAAAGAAGGGAGGAAAGAAGAAGGCAGCTGATCCATTTTCAAAGAAGGATTGGTATGATATCAAGG CTCCTTCAGTTTTCTCTGTGAAAAATGTTGGCAAGACTCTTGTTACTCGTACCCAGGGTACCAAGATTGCTTCAGAAGGACTCAAACATCGTGTGTTTGA GGTCTCACTTGCGGACCTTCAAGGTGATGAGGATAATGCTTACAGAAAGATCCGATTGAGAGCTGAAGATGTTCAAGGGAGGAATGTTTTGACAAACTTC TGGGGAATGAATTTTACCAATGACAAGTTGAGGTCTTTGGTGAGGAAATGGCAAACTTTGATTGAAGCTCATGTTGATGTGAAAACCACTGATAACTACA CTTTAAGAATGTTTTGCATTGGGTTCACTAAAAGGCGTCCCAACCAAGTCAAGAGGACTACTTATGCGCAGTCCAGCCAAATACGACAAATCCGCCGTAA AATGAGGGAAATCATGACAGCCCAAGCAGCTTCTTGTGATCTCAAGGAATTGGTCCGCAAGTTCATTCCTGAAAGCATTGGCAAGGAAATTGAGAAGGCA ACTTCTAGCATATACCCGCTTCAAAATGTGTTCATTAGGAAAGTGAAGATCTTAAAGGCTCCAAAGTTTGATCTTGGAAAATTGATGGAGGTTCATGGGG ACTACTCTGAAGATGTTGGTGTGAAGTTGGATAGGCCTGCAGAAGAGACCATGGCCGAGGCCCCTGCTGAAACTGCTTGA
AA sequence Show only first row Show all	>Potri.008G156300.2 pacid=42806011 polypeptide=Potri.008G156300.2.p locus=Potri.008G156300 ID=Potri.008G156300.2.v4.1 annot-version=v4.1 MAVGKNKRISKGKKGGKKKAADPFSKKDWYDIKAPSVFSVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQGDEDNAYRKIRLRAEDVQGRNVLTNF WGMNFTNDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTTYAQSSQIRQIRRKMREIMTAQAASCDLKELVRKFIPESIGKEIEKA TSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKLDRPAEETMAEAPAETA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04840			Ribosomal protein S3Ae (.1)		Potri.008G156300 [exp]	0	1	RS3.2
AT3G05590		RPL18	ribosomal protein L18 (.1)		Potri.014G127300 [exp]	1.41	0.9824	RPL18.10
AT1G67430			Ribosomal protein L22p/L17e fa...		Potri.015G094400 [exp]	1.73	0.9843	RPL17.2
AT1G74050			Ribosomal protein L6 family pr...		Potri.009G065800 [exp]	3.16	0.9748
AT1G77940			Ribosomal protein L7Ae/L30e/S1...		Potri.005G080700 [exp]	3.74	0.9755
AT4G16720			Ribosomal protein L23/L15e fam...		Potri.001G156100 [exp]	3.87	0.9778	RPL15.3
AT5G35530			Ribosomal protein S3 family pr...		Potri.006G222100 [exp]	4.24	0.9764
AT3G02560			Ribosomal protein S7e family p...		Potri.017G115400 [exp]	4.24	0.9793
AT4G09800		RPS18C	S18 ribosomal protein (.1)		Potri.005G211200 [exp]	4.47	0.9783
AT5G43970		ATTOM22-V, TOM2...	TRANSLOCASE OUTER MITOCHONDRIA...		Potri.002G257200 [exp]	5.00	0.9620	TOM22.1
AT3G12390			Nascent polypeptide-associated...		Potri.001G034400 [exp]	6.24	0.9691

Compare expression of checked genes

Potri.008G156300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.