Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14750 306 / 2e-100 IQD19 IQ-domain 19 (.1) AT3G16490 137 / 4e-36 IQD26 IQ-domain 26 (.1) AT4G29150 119 / 3e-29 IQD25 IQ-domain 25 (.1) AT4G23060 118 / 1e-28 IQD22 IQ-domain 22 (.1) AT1G51960 101 / 2e-23 IQD27 IQ-domain 27 (.1) AT4G00820 100 / 2e-22 IQD17 IQ-domain 17 (.1) AT3G49260 98 / 6e-22 IQD21 IQ-domain 21 (.1.2.3) AT1G01110 97 / 2e-21 IQD18 IQ-domain 18 (.1.2) AT5G03040 94 / 1e-20 IQD2 IQ-domain 2 (.1.2.3) AT5G62070 88 / 8e-19 IQD23 IQ-domain 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G082600 [exp] 686 / 0 AT4G14750 261 / 2e-83 IQ-domain 19 (.1) Potri.013G038901 [exp] 188 / 4e-55 AT4G14750 128 / 2e-33 IQ-domain 19 (.1) Potri.005G051500 [exp] 185 / 5e-54 AT4G14750 127 / 6e-33 IQ-domain 19 (.1) Potri.001G190500 [exp] 159 / 5e-44 AT3G16490 293 / 5e-96 IQ-domain 26 (.1) Potri.003G047800 [exp] 154 / 4e-42 AT3G16490 299 / 1e-98 IQ-domain 26 (.1) Potri.012G139800 [exp] 135 / 4e-35 AT5G07240 137 / 3e-36 IQ-domain 24 (.1) Potri.015G142200 [exp] 128 / 2e-32 AT5G07240 138 / 3e-36 IQ-domain 24 (.1) Potri.003G122800 [exp] 119 / 4e-29 AT4G23060 109 / 1e-25 IQ-domain 22 (.1) Potri.001G108800 [exp] 102 / 3e-23 AT4G23060 179 / 1e-50 IQ-domain 22 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006613 [exp] 469 / 3e-163 AT4G14750 295 / 6e-96 IQ-domain 19 (.1) Lus10021904 [exp] 436 / 3e-150 AT4G14750 314 / 2e-103 IQ-domain 19 (.1) Lus10041188 [exp] 370 / 6e-124 AT4G14750 288 / 2e-93 IQ-domain 19 (.1) Lus10039366 [exp] 167 / 5e-49 AT4G14750 71 / 2e-14 IQ-domain 19 (.1) Lus10009187 [exp] 102 / 3e-23 AT4G14750 114 / 8e-28 IQ-domain 19 (.1) Lus10012608 [exp] 97 / 2e-21 AT1G01110 432 / 8e-147 IQ-domain 18 (.1.2) Lus10010104 [exp] 95 / 2e-20 AT1G01110 434 / 3e-147 IQ-domain 18 (.1.2) Lus10019916 [exp] 94 / 2e-20 AT5G03040 410 / 9e-141 IQ-domain 2 (.1.2.3) Lus10041419 [exp] 94 / 2e-20 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10014870 [exp] 93 / 9e-20 AT2G26180 249 / 5e-74 IQ-domain 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif CL0220 [poplar] [flax] PF13178 [poplar] [flax] DUF4005 Protein of unknown function (DUF4005)
Representative CDS sequence Show only first row Show all	>Potri.008G156700.1 pacid=42808317 polypeptide=Potri.008G156700.1.p locus=Potri.008G156700 ID=Potri.008G156700.1.v4.1 annot-version=v4.1 ATGGGGAAGTCAGGCAAATGGCTTAAAAGTTTCTTGACAGGGAAGAAAGACAAGGAGAGGGAGAAGAAGGGTACAACTCAACAGAATTCAACACCTATTA TTGAGAATCCAGTGACCCCAATCTCGATCCCACCTGCTACTCCTAAAGAAAAAAGAAGATGGAGTTTTCGCAGATCATCAGCCACTGCAGCTGCTCCCAA GGACTCGAATTCCACAGAACCAATTGCCACCACACAACCAGCTGCGGTGCAGGGAACGTTGGATTCAGATAATGAACAGAAAAGGCACGTGATGGCTATG GCAGCTGCTGCGGATGCAGCTATGGCCGCTGCACAGGCTGCAGCTGCTGTGATCCGTCTAACTACTGCCACCTCCAGGAGAAACAGTACAATCGAAGAGG ATGCTGCCGTAAAAATTCAATCAGTCTTTCGATCTTATCTGGCAAGAAAAGCATTATGTGCATTGAAAGGCTTAGTGAAGTTGCAGGCACTCGTGAGGGG TCACCTGGTGAGGAAACAGGCAACTGCTACACTCAGGTGCATGCAGGCATTGGTGAACGTACAGACTAGAGCTCGGGCTCAGAGGATCTGGATGGCTGAA GACGTAAAGCCCAGCCAGAGGAATTCGATCCACAGAAAATCGACACAAGAGAATAGGATTAGGCACACAAATGATGAGAATGATAGAGGCATGGATCAGG AGAACATCAAGATTGTAGAGGTGGATGTTGGAGAATCGAAGGGAAGTATAAAGAGCAGAAATGGCTACTCTCATCGTCCACAAACAGATCTAACAGAGCA TAGATTTTCCACACATTATGCCTCAAATCATGCGTACTCGAAGAAAGAGAACCACCAGATCTCTCCAGCTCCATCAGCTCTAACAGATATGAGCCCCAGT GCTTGCAGTGGGCATTTTGAGGAAAATTCCTTCAGCACAGCACATAGCAGCCCTCAGTACTACTCTGCAGTATCAAAACCTGACCCATCAAGAATTCCAT TCGCCTTACCAAGGCCAGAGTACGCAGAATCTCTGTCCTATGACTACCCATTATTTCCAAATTACATGGCAAACACAGAATCTTTCAGGGCCAAAGTTCG GTCACATAGTGCACCAAAACAAAGGCCAGACTCATTTGAGAGGCAACCAAGTAGGAAGAGGGCATCAATAGAGGGAAGGAATGTCCCAAGGCCTATGCGG ATGCAGCGGTCGTCTTCCAATGTTGGAGCCACAGCTCAAGGCTATATATATCCATGGTCAATTAAGCTTGACAGAACAACAGTATCACTTAGAGATAGTG AGTGCGGATCCACAAGTACAGTGCTCACAAACACCAATGACTGCAGTTCTCTTGTTGGATTTGAAGTTCGTGGAAATAGGTACTAA
AA sequence Show only first row Show all	>Potri.008G156700.1 pacid=42808317 polypeptide=Potri.008G156700.1.p locus=Potri.008G156700 ID=Potri.008G156700.1.v4.1 annot-version=v4.1 MGKSGKWLKSFLTGKKDKEREKKGTTQQNSTPIIENPVTPISIPPATPKEKRRWSFRRSSATAAAPKDSNSTEPIATTQPAAVQGTLDSDNEQKRHVMAM AAAADAAMAAAQAAAAVIRLTTATSRRNSTIEEDAAVKIQSVFRSYLARKALCALKGLVKLQALVRGHLVRKQATATLRCMQALVNVQTRARAQRIWMAE DVKPSQRNSIHRKSTQENRIRHTNDENDRGMDQENIKIVEVDVGESKGSIKSRNGYSHRPQTDLTEHRFSTHYASNHAYSKKENHQISPAPSALTDMSPS ACSGHFEENSFSTAHSSPQYYSAVSKPDPSRIPFALPRPEYAESLSYDYPLFPNYMANTESFRAKVRSHSAPKQRPDSFERQPSRKRASIEGRNVPRPMR MQRSSSNVGATAQGYIYPWSIKLDRTTVSLRDSECGSTSTVLTNTNDCSSLVGFEVRGNRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14750		IQD19	IQ-domain 19 (.1)		Potri.008G156700 [exp]	0	1
AT1G72490			unknown protein		Potri.001G166700 [exp]	1.00	0.8302
AT3G57170			N-acetylglucosaminyl transfera...		Potri.006G044500 [exp]	1.41	0.7998
AT5G44680			DNA glycosylase superfamily pr...		Potri.008G081000 [exp]	2.44	0.7994
AT2G12646			PLATZ transcription factor fam...		Potri.018G116000 [exp]	3.16	0.7719
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Potri.002G193300 [exp]	9.00	0.7486
AT1G64640		AtENODL8	early nodulin-like protein 8 (...		Potri.001G085100 [exp]	10.19	0.7510
AT1G55740		RS1, ATSIP1	raffinose synthase 1, seed imb...		Potri.011G166700 [exp]	10.95	0.6605	AGA1.1
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Potri.013G154700 [exp]	11.40	0.7161	Pt-EXP2.8,PtrEXPA2
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Potri.009G052300 [exp]	11.61	0.6474
					Potri.019G089200 [exp]	12.00	0.6986

Compare expression of checked genes

Potri.008G156700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.