Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14746 176 / 7e-56 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G082500 [exp] 320 / 2e-112 AT4G14746 187 / 4e-60 unknown protein Potri.013G039300 [exp] 147 / 4e-44 AT4G14746 115 / 9e-32 unknown protein Potri.005G051900 [exp] 144 / 4e-43 AT4G14746 120 / 1e-33 unknown protein Potri.003G057700 [exp] 92 / 4e-23 AT4G14746 83 / 1e-19 unknown protein Potri.001G176800 [exp] 88 / 3e-21 AT4G14746 87 / 8e-21 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039368 [exp] 196 / 2e-63 AT4G14746 164 / 1e-50 unknown protein Lus10035902 [exp] 85 / 4e-20 AT4G14746 84 / 7e-20 unknown protein Lus10025761 [exp] 72 / 2e-15 AT4G14746 79 / 6e-18 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G156800.2 pacid=42806017 polypeptide=Potri.008G156800.2.p locus=Potri.008G156800 ID=Potri.008G156800.2.v4.1 annot-version=v4.1 ATGGCTTATGCTAGTACCAGTATTGCCTGGATTGCAATCCTTTTTCTTTCGCAGCCTTTGATTGCTAGTAGTGACCTTTTATCTCCCCTGCTGTCCCCTA TCTTTGATGATGTGTGCAAAAAAGTGGAATGTGGGAAAGGAACTTGCAAGCCTTCTGACAATAGCACTTGGTTTTATGAATGTGAATGTGATCCTGGGTG GACGCAGACTCGCTTTGATCAAGATGATCATCTCCAGTTTCTTCCTTGCGTAGTTCCCAATTGTACCGTGAACTTCTCGTGCACAGCAGCACCATCACCT GTTCAAGAGAAAGCAAGCAGAGATAATCAGTCGATTTTCGATCCCTGCTTTTGGGCTGATTGTGGAGGTGGCTCGTGCAACAAGACATCTCAGCTCACTT ACAGTTGCGCATGTGCAGAGGGTTATAGTAACCTTCTGAATGTCTCTACCTTTCCTTGTTACAAAGATTGTGCAATTGGAATGGATTGTTCAAACCTTGG TATTATGATGTCAAACAAATCAGCTGCTCCAACACCTGTTATGGCTGGCAATAGTATGAACCAAGCTTCTTCAATCCTGCAAGAAAAATTCCTTTGGCTG ATGGCATTGATGATGTTGCTGCCTGTGATTGAGTGA
AA sequence Show only first row Show all	>Potri.008G156800.2 pacid=42806017 polypeptide=Potri.008G156800.2.p locus=Potri.008G156800 ID=Potri.008G156800.2.v4.1 annot-version=v4.1 MAYASTSIAWIAILFLSQPLIASSDLLSPLLSPIFDDVCKKVECGKGTCKPSDNSTWFYECECDPGWTQTRFDQDDHLQFLPCVVPNCTVNFSCTAAPSP VQEKASRDNQSIFDPCFWADCGGGSCNKTSQLTYSCACAEGYSNLLNVSTFPCYKDCAIGMDCSNLGIMMSNKSAAPTPVMAGNSMNQASSILQEKFLWL MALMMLLPVIE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14746			unknown protein		Potri.008G156800 [exp]	0	1
AT5G15790			RING/U-box superfamily protein...		Potri.003G161600 [exp]	8.48	0.7232
AT4G28640	AUX_IAA	IAA11	indole-3-acetic acid inducible...		Potri.006G066600 [exp]	10.48	0.7211
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Potri.005G043400 [exp]	12.96	0.6784
AT5G37810		NIP4;1, NLM4	NOD26-LIKE MIP 4, NOD26-like i...		Potri.010G112900 [exp]	18.73	0.6402
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Potri.006G099600 [exp]	20.04	0.6987
AT5G47635			Pollen Ole e 1 allergen and ex...		Potri.016G006200 [exp]	25.15	0.7122
AT5G62200			Embryo-specific protein 3, (AT...		Potri.015G132700 [exp]	25.21	0.7039
AT1G17455		ELF4-L4	ELF4-like 4 (.1.2)		Potri.006G143800 [exp]	30.98	0.6396
AT5G22400			Rho GTPase activating protein ...		Potri.006G211200 [exp]	34.35	0.7034
AT5G41800			Transmembrane amino acid trans...		Potri.003G138100 [exp]	35.39	0.6968

Compare expression of checked genes

Potri.008G156800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.