Plant FIBer expression Database

Potri.008G157100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G63310 243 / 4e-81 BIL4 BRZ-INSENSITIVE-LONG HYPOCOTYLS 4, Bax inhibitor-1 family protein (.1)
AT1G03070 238 / 4e-79 Bax inhibitor-1 family protein (.1.2)
AT4G02690 230 / 7e-76 Bax inhibitor-1 family protein (.1)
AT4G14730 229 / 1e-75 Bax inhibitor-1 family protein (.1)
AT4G15470 201 / 2e-64 Bax inhibitor-1 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G049000
[exp]
251 / 4e-84 AT1G03070 393 / 2e-140 Bax inhibitor-1 family protein (.1.2)
Potri.005G214000
[exp]
246 / 2e-82 AT1G03070 310 / 2e-107 Bax inhibitor-1 family protein (.1.2)
Potri.010G028900
[exp]
191 / 1e-60 AT4G15470 348 / 2e-122 Bax inhibitor-1 family protein (.1)
Potri.008G199200
[exp]
188 / 2e-59 AT4G15470 348 / 3e-122 Bax inhibitor-1 family protein (.1)
Potri.005G213900
[exp]
186 / 1e-58 AT3G63310 259 / 9e-88 BRZ-INSENSITIVE-LONG HYPOCOTYLS 4, Bax inhibitor-1 family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004077
[exp]
262 / 2e-88 AT1G03070 404 / 2e-144 Bax inhibitor-1 family protein (.1.2)
Lus10022085
[exp]
245 / 1e-81 AT1G03070 406 / 3e-145 Bax inhibitor-1 family protein (.1.2)
Lus10042631
[exp]
244 / 2e-81 AT1G03070 408 / 5e-146 Bax inhibitor-1 family protein (.1.2)
Lus10041240
[exp]
190 / 4e-60 AT4G15470 369 / 2e-130 Bax inhibitor-1 family protein (.1)
Lus10021950
[exp]
147 / 1e-43 AT4G15470 288 / 8e-99 Bax inhibitor-1 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0453 Apoptosis-Inhib PF01027 Bax1-I Inhibitor of apoptosis-promoting Bax1
Representative CDS sequence
>Potri.008G157100.1 pacid=42808223 polypeptide=Potri.008G157100.1.p locus=Potri.008G157100 ID=Potri.008G157100.1.v4.1 annot-version=v4.1
ATGGAATCCAACAATAAGAAAGGATTTGACATGGAAGCTGGTATAAGTAATCAACTGTATCCAATGATGCAAGAGCCACCGCAGTTACGCTGGGCCTTTA
TCAGGAAAGTTTACATAATACTTGCCATGCAATTGCTTCTCACGGTTGGTGTTGCAGCCACCGTCGTCTTTGTCCCTCCAATCCCTCGCTTCATTCTCCA
TACCACACCTGGCCTTGCCATCTACATCGTCTCCCTCATCCTTACCCTCATACTGCTTTGGCCATTGCATGTTTATTCCAAGCGTCACCCATGGAACTAT
TTTTTTATGGCGCTGTTCACTATTTGCATTGCGTTTGCCGTTGGTCTTTCTTGTGCTCTCACAAAAGGTAGGATTGTTTTGGAGGCAGCAATTCTGACAA
GTGTTGTGGTTGTTGGTCTAACTCTCTATACCTTCTGGGCTGCGAAAAGAGGCCAAGATTTCAGCTTCCTCGGACCCTTTTTATTTAGTGCTGTCTTAGT
CCTTATTGTTTTTGGGTTGATTCAGTTCCTTTTCCCTCTTGGAAAGTGGTCACTGATGATATATGGTTGCTTGGGAGCGATCGTATTCTCTGGTTTCATC
GTTTATGACACTGGCAACTTGATCAAGCGTTTCAGCTATGACGAGTACATCTCAGCAGCAATCAACCTCTATCTGGATATTATCAATCTATTCCTCGCTC
TCCTCAACATCTTCAATGCAGTTGACAATTAG
AA sequence
>Potri.008G157100.1 pacid=42808223 polypeptide=Potri.008G157100.1.p locus=Potri.008G157100 ID=Potri.008G157100.1.v4.1 annot-version=v4.1
MESNNKKGFDMEAGISNQLYPMMQEPPQLRWAFIRKVYIILAMQLLLTVGVAATVVFVPPIPRFILHTTPGLAIYIVSLILTLILLWPLHVYSKRHPWNY
FFMALFTICIAFAVGLSCALTKGRIVLEAAILTSVVVVGLTLYTFWAAKRGQDFSFLGPFLFSAVLVLIVFGLIQFLFPLGKWSLMIYGCLGAIVFSGFI
VYDTGNLIKRFSYDEYISAAINLYLDIINLFLALLNIFNAVDN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G63310 BIL4 BRZ-INSENSITIVE-LONG HYPOCOTYL... Potri.008G157100
[exp]
0 1
AT1G78270 ATUGT85A4 UDP-glucosyl transferase 85A4 ... Potri.017G051900
[exp]
1.41 0.9566
AT5G02750 SGR9 SHOOT GRAVITROPISM 9, RING/U-b... Potri.006G216200
[exp]
6.48 0.9562
Potri.014G158501
[exp]
7.41 0.9475
AT3G52380 CP33, PDE322 PIGMENT DEFECTIVE 322, chlorop... Potri.016G068300
[exp]
18.16 0.9528 CP33.2
AT5G52010 C2H2ZnF C2H2-like zinc finger protein ... Potri.014G025100
[exp]
18.81 0.9434
AT1G29670 GDSL-like Lipase/Acylhydrolase... Potri.018G089300
[exp]
23.68 0.9342
AT4G10000 Thioredoxin family protein (.1... Potri.013G102000
[exp]
25.09 0.9416
Potri.008G218433
[exp]
28.84 0.9382
AT5G07670 RNI-like superfamily protein (... Potri.001G125800
[exp]
30.24 0.9356
Potri.008G210450
[exp]
30.62 0.9378

Potri.008G157100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.