Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14723 69 / 4e-16 EPFL4, CLL2 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein AT3G22820 67 / 1e-15 EPFL5, CLL1 epidermal patterning factor like 5, CHALLAH-LIKE 1, allergen-related (.1) AT2G30370 55 / 2e-10 EPFL6, CHAL EPF1-like 6, CHALLAH, allergen-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G128200 [exp] 55 / 1e-10 AT2G30370 110 / 7e-32 EPF1-like 6, CHALLAH, allergen-related (.1.2) Potri.013G155500 [exp] 54 / 3e-10 AT2G30370 93 / 7e-25 EPF1-like 6, CHALLAH, allergen-related (.1.2) Potri.010G082200 [exp] 43 / 3e-06 AT4G14723 71 / 1e-16 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006616 [exp] 65 / 3e-15 AT4G14723 99 / 5e-29 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein Lus10041186 [exp] 59 / 4e-12 AT4G14723 106 / 5e-31 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein Lus10021901 [exp] 57 / 9e-12 AT4G14723 104 / 2e-30 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein Lus10024189 [exp] 53 / 6e-10 ND 107 / 4e-31
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G157300.1 pacid=42805958 polypeptide=Potri.008G157300.1.p locus=Potri.008G157300 ID=Potri.008G157300.1.v4.1 annot-version=v4.1 ATGACCCTACTACGCCACCGTCACCACTTCTTATCAACACTCACATTCTTCACTTTTCTTTTATTTTTATCTGCCCCAGCTACCACACTCTCCCAACTAG GTAGTGGAGTACTTCAGCAGGGAGGGGAGGAGAGGGGAAAGGGGGGCGGGCTAAGGGCTTTTCAGCGAGTTCTGACTCAGAAGCGACTCGGTGGACCAGG TTCTTCACCACCTTCATGTAGATCCAAGTGTGGAAAGTGCTCGCCATGTAAAGCAGTTCACGTGGCAATTCAACCTGGTTTGAGTATGCCATTAGAGTAT TATCCAGAGGCTTGGAGATGTAAGTGTGGCAACGAGCTTTTTATGCCTTAA
AA sequence Show only first row Show all	>Potri.008G157300.1 pacid=42805958 polypeptide=Potri.008G157300.1.p locus=Potri.008G157300 ID=Potri.008G157300.1.v4.1 annot-version=v4.1 MTLLRHRHHFLSTLTFFTFLLFLSAPATTLSQLGSGVLQQGGEERGKGGGLRAFQRVLTQKRLGGPGSSPPSCRSKCGKCSPCKAVHVAIQPGLSMPLEY YPEAWRCKCGNELFMP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14723		EPFL4, CLL2	epidermal patterning factor li...		Potri.008G157300 [exp]	0	1
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Potri.015G110700 [exp]	1.73	0.9875
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Potri.010G212600 [exp]	2.82	0.9851
AT1G48405			Kinase interacting (KIP1-like)...		Potri.015G030100 [exp]	3.87	0.9715
AT2G23060			Acyl-CoA N-acyltransferases (N...		Potri.010G144700 [exp]	4.00	0.9719
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Potri.011G076400 [exp]	4.58	0.9752
AT2G19170		SLP3	subtilisin-like serine proteas...		Potri.003G138800 [exp]	4.58	0.9351
AT4G31980			unknown protein		Potri.013G146300 [exp]	5.47	0.9564
AT1G60060			Serine/threonine-protein kinas...		Potri.010G096400 [exp]	5.83	0.9426
AT2G27240			Aluminium activated malate tra...		Potri.001G217200 [exp]	6.92	0.9638
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G227400 [exp]	7.34	0.9692

Compare expression of checked genes

Potri.008G157300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.