Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43850 308 / 2e-108 ATARD4 RmlC-like cupins superfamily protein (.1) AT4G14710 257 / 4e-88 ATARD2 RmlC-like cupins superfamily protein (.1.2.3.4.5) AT2G26400 250 / 2e-85 ARD, ATARD3 acireductone dioxygenase 3 (.1) AT4G14716 249 / 4e-85 SGB3, ATARD1 suppressor of G Beta 3, acireductone dioxygenase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G157500 [exp] 260 / 2e-89 AT4G14710 333 / 5e-118 RmlC-like cupins superfamily protein (.1.2.3.4.5) Potri.010G082101 [exp] 89 / 2e-23 AT2G26400 97 / 8e-27 acireductone dioxygenase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021902 [exp] 296 / 2e-103 AT5G43850 303 / 1e-106 RmlC-like cupins superfamily protein (.1) Lus10039375 [exp] 258 / 2e-88 AT4G14710 341 / 7e-121 RmlC-like cupins superfamily protein (.1.2.3.4.5) Lus10006617 [exp] 256 / 1e-87 AT4G14710 342 / 2e-121 RmlC-like cupins superfamily protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF07883 [poplar] [flax] Cupin_2 Cupin domain
Representative CDS sequence Show only first row Show all	>Potri.008G157400.2 pacid=42807627 polypeptide=Potri.008G157400.2.p locus=Potri.008G157400 ID=Potri.008G157400.2.v4.1 annot-version=v4.1 ATGGCTATCGAGGCATGGTTCATGGATGAAACTAGTGGAGAAGACCAAAGACTCCCTCGTCACTGTAACCCAAAAGAGTTCGTTTCCCTTGACTACTTGG CTGAGTTGGGAGTGTTATACTGGCGCTTGAACCCAGCGAACTACGAGAACGATGAAGAATTAAAGAAGATTAGGGAAGACAGGGGATACAATTACATGGA CTTGCTTGATATTTGCCCAGAGAAAGTTGCTGATTTCAAGGAGAAGCTTAAGAACTTCTATACGGAGCACATACATGCTGATGAAGAGATACGTTACTGC TTAGAAGGAAGTGCATATTTTGATGTGCGAGACAAAGATGATCGTTGGATCCGTATCTGGATCAAGGCGGGTGATCTTATCATTCTGCCCGCAGGGATCT ACCATCGGTTCACTCTCGACACTGGTGACTATGTTAAGTTGATGAGGTTGTTCGTGGGAGAGCCAGTGTGGACAGCTTATAATCGCCCACAGGAAGATCA TCCAGCAAGGAAGGAGTATATCAAGAGTATGGTGACCGAGAAGGTTGGCGTGGCACTTGAAGCTTTTTAA
AA sequence Show only first row Show all	>Potri.008G157400.2 pacid=42807627 polypeptide=Potri.008G157400.2.p locus=Potri.008G157400 ID=Potri.008G157400.2.v4.1 annot-version=v4.1 MAIEAWFMDETSGEDQRLPRHCNPKEFVSLDYLAELGVLYWRLNPANYENDEELKKIREDRGYNYMDLLDICPEKVADFKEKLKNFYTEHIHADEEIRYC LEGSAYFDVRDKDDRWIRIWIKAGDLIILPAGIYHRFTLDTGDYVKLMRLFVGEPVWTAYNRPQEDHPARKEYIKSMVTEKVGVALEAF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43850		ATARD4	RmlC-like cupins superfamily p...		Potri.008G157400 [exp]	0	1
AT1G23740		AOR	alkenal/one oxidoreductase, Ox...		Potri.016G136100 [exp]	1.41	0.9802
AT1G62250			unknown protein		Potri.011G006700 [exp]	2.00	0.9540
					Potri.013G093450 [exp]	3.16	0.9475
AT3G04790		EMB3119	EMBRYO DEFECTIVE 3119, Ribose ...		Potri.005G052000 [exp]	6.92	0.9484
AT1G67740		YCF32, PSBY	photosystem II BY (.1)		Potri.010G052000 [exp]	12.96	0.9536	PSBY.2
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Potri.009G116600 [exp]	15.00	0.9161
AT3G56940		CRD1, CHL27, AC...	COPPER RESPONSE DEFECT 1, dica...		Potri.016G025000 [exp]	15.49	0.9425	AT103.1
AT5G42070			unknown protein		Potri.003G141700 [exp]	17.94	0.9414
AT1G42960			unknown protein		Potri.005G254200 [exp]	25.51	0.9215
AT1G76080		ATCDSP32, CDSP3...	ARABIDOPSIS THALIANA CHLOROPLA...		Potri.005G245700 [exp]	26.49	0.9405

Compare expression of checked genes

Potri.008G157400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.