Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14710 332 / 1e-117 ATARD2 RmlC-like cupins superfamily protein (.1.2.3.4.5) AT4G14716 329 / 2e-116 SGB3, ATARD1 suppressor of G Beta 3, acireductone dioxygenase 1 (.1) AT2G26400 319 / 2e-112 ARD, ATARD3 acireductone dioxygenase 3 (.1) AT5G43850 274 / 1e-94 ATARD4 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G157400 [exp] 259 / 5e-89 AT5G43850 308 / 2e-108 RmlC-like cupins superfamily protein (.1) Potri.010G082101 [exp] 119 / 4e-35 AT2G26400 97 / 8e-27 acireductone dioxygenase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039375 [exp] 333 / 1e-117 AT4G14710 341 / 7e-121 RmlC-like cupins superfamily protein (.1.2.3.4.5) Lus10006617 [exp] 331 / 6e-117 AT4G14710 342 / 2e-121 RmlC-like cupins superfamily protein (.1.2.3.4.5) Lus10021902 [exp] 260 / 3e-89 AT5G43850 303 / 1e-106 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF07883 [poplar] [flax] Cupin_2 Cupin domain
Representative CDS sequence Show only first row Show all	>Potri.008G157500.1 pacid=42805798 polypeptide=Potri.008G157500.1.p locus=Potri.008G157500 ID=Potri.008G157500.1.v4.1 annot-version=v4.1 ATGGTTGCACCGGCAAAGGATCCCAGAGAAGAAGTCATTCAAGCATGGTACATGGATGATACTGATGAAGACCAGCGGCTGCCTCATCACAGGGAGCCCA AGGAATTTGTGTCTTTGGACCAACTTGCTGAGCTTGGTGTGCTTAGTTGGAAGCTTGATGCTGACAACCATGAAACAGATGCAGAGTTGAAGAAGATACG TGAAGAGCGTGGATATTCCTATGTGGACTTGATTGAAGTTTGCCCAGAGAAACTGCCTAATTATGAGGAGAAGATCAAGAGTTTTTTCGAAGAACATCTT CACACTGATGAGGAGATCCGCTACTGTTTGGGTGGAAGTGGTTATTTTGATGTCAGGGATCATAATGACCACTGGATTCGTGTTTGGGTGAAGAAAGGTG GAATGATCGTCTTACCTGCTGGAATTTACCACCGTTTCACGTTGGACACAGATAACTATATCAAGGCAATGAGGCTGTTTGTGGGTGATCCAGTTTGGAC TCCTTTTAATCGGCCACATGATCATCTACCTGCAAGGAAAGAGTATGTGCAAGCTTTTGTTAGCAAGGACGACAGTGCTCGTGCTGTTGATGCTGCTGCA TGA
AA sequence Show only first row Show all	>Potri.008G157500.1 pacid=42805798 polypeptide=Potri.008G157500.1.p locus=Potri.008G157500 ID=Potri.008G157500.1.v4.1 annot-version=v4.1 MVAPAKDPREEVIQAWYMDDTDEDQRLPHHREPKEFVSLDQLAELGVLSWKLDADNHETDAELKKIREERGYSYVDLIEVCPEKLPNYEEKIKSFFEEHL HTDEEIRYCLGGSGYFDVRDHNDHWIRVWVKKGGMIVLPAGIYHRFTLDTDNYIKAMRLFVGDPVWTPFNRPHDHLPARKEYVQAFVSKDDSARAVDAAA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14710		ATARD2	RmlC-like cupins superfamily p...		Potri.008G157500 [exp]	0	1
AT5G67140			F-box/RNI-like superfamily pro...		Potri.005G140000 [exp]	2.82	0.8027
AT3G51130			unknown protein		Potri.005G117200 [exp]	3.46	0.7924
AT1G21840		UREF	urease accessory protein F (.1...		Potri.001G224400 [exp]	11.13	0.7422
					Potri.008G141600 [exp]	11.35	0.7342
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Potri.019G118400 [exp]	12.24	0.8185
AT2G28710	C2H2ZnF		C2H2-type zinc finger family p...		Potri.010G209400 [exp]	12.24	0.7633
AT1G11760		MED32	unknown protein		Potri.004G152700 [exp]	14.07	0.7889
AT2G26060		EMB1345	embryo defective 1345, Transdu...		Potri.001G221000 [exp]	17.23	0.7036
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Potri.012G097200 [exp]	21.21	0.7892
AT3G51840		ATG6, ATSCX, AC...	acyl-CoA oxidase 4 (.1)		Potri.016G118000 [exp]	21.33	0.7376

Compare expression of checked genes

Potri.008G157500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.