Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22840 191 / 4e-62 ELIP1 EARLY LIGHT-INDUCABLE PROTEIN, Chlorophyll A-B binding family protein (.1) AT4G14690 184 / 2e-59 ELIP2 EARLY LIGHT-INDUCIBLE PROTEIN 2, Chlorophyll A-B binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G157900 [exp] 357 / 5e-128 AT3G22840 192 / 6e-63 EARLY LIGHT-INDUCABLE PROTEIN, Chlorophyll A-B binding family protein (.1) Potri.008G158200 [exp] 295 / 2e-103 AT3G22840 194 / 2e-63 EARLY LIGHT-INDUCABLE PROTEIN, Chlorophyll A-B binding family protein (.1) Potri.008G158000 [exp] 293 / 7e-103 AT3G22840 192 / 6e-63 EARLY LIGHT-INDUCABLE PROTEIN, Chlorophyll A-B binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006621 [exp] 181 / 2e-58 AT3G22840 194 / 3e-63 EARLY LIGHT-INDUCABLE PROTEIN, Chlorophyll A-B binding family protein (.1) Lus10039379 [exp] 181 / 5e-58 AT4G14690 196 / 7e-64 EARLY LIGHT-INDUCIBLE PROTEIN 2, Chlorophyll A-B binding family protein (.1) Lus10039378 [exp] 171 / 3e-54 AT3G22840 182 / 6e-59 EARLY LIGHT-INDUCABLE PROTEIN, Chlorophyll A-B binding family protein (.1) Lus10006620 [exp] 169 / 1e-53 AT3G22840 183 / 4e-59 EARLY LIGHT-INDUCABLE PROTEIN, Chlorophyll A-B binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00504 [poplar] [flax] Chloroa_b-bind Chlorophyll A-B binding protein
Representative CDS sequence Show only first row Show all	>Potri.008G157750.1 pacid=42807703 polypeptide=Potri.008G157750.1.p locus=Potri.008G157750 ID=Potri.008G157750.1.v4.1 annot-version=v4.1 ATGGCCACATCAACAGTCATGCAGACCGTCCTTGCAACACCAGTACCTAGTGGTCTGGTGAAAAACCGGTCTCGAGTGAGCAACTTGTTTTCTGCGACGT TTGTGCCACGACTACGTGGCAGTGCTAGCAAACGGGTGCAGTGCTCCAAGCTGGATGACCAGATCAAGAAGTTAGCAGAGCCAAGTTCTACTCCTATGCC AAAGGCCCGCACAAAATTCCTTGATTTGTTCGCATTTAGCGGACCCGCACCAGAGAGGATCAATGGCAGGCTTGCCATGATAGGCTTTGTCGCTGCAATG GCAGTGGAACTGTCCAAGGGTCAAGACCTTTCTTATCAGATATCTAACGGTGGAGTCTCGTGGTTCGTCGGAACAAGTATTCTGCTCTCTGTCGCGTCTT TGATCCCACTGTTCAAAGGGGTCAGCGCGGAATCCAAGTCAGATGGCGTCATGACATCTGATGCTGAGATGTGGAACGGTAGATTTGCCATGTTGGGTTT GGTTGCGTTGGCCTACACCGAGTATGTCTCGGGTGGAACCCTTCTGTAG
AA sequence Show only first row Show all	>Potri.008G157750.1 pacid=42807703 polypeptide=Potri.008G157750.1.p locus=Potri.008G157750 ID=Potri.008G157750.1.v4.1 annot-version=v4.1 MATSTVMQTVLATPVPSGLVKNRSRVSNLFSATFVPRLRGSASKRVQCSKLDDQIKKLAEPSSTPMPKARTKFLDLFAFSGPAPERINGRLAMIGFVAAM AVELSKGQDLSYQISNGGVSWFVGTSILLSVASLIPLFKGVSAESKSDGVMTSDAEMWNGRFAMLGLVALAYTEYVSGGTLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Potri.008G157750 [exp]	0	1
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Potri.008G157900 [exp]	1.41	0.9973
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Potri.017G125600 [exp]	2.44	0.9875
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Potri.018G094800 [exp]	2.82	0.9855
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Potri.004G155400 [exp]	4.24	0.9679
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Potri.008G158000 [exp]	4.47	0.9774	ELIP2.1,Elip4
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Potri.008G158200 [exp]	5.29	0.9629	Elip1,Pt-ELIP2.2
					Potri.012G031150 [exp]	6.32	0.9478
AT1G64320			myosin heavy chain-related (.1...		Potri.003G137300 [exp]	6.48	0.9122
AT1G59960			NAD(P)-linked oxidoreductase s...		Potri.012G039901 [exp]	7.41	0.9442
					Potri.016G065800 [exp]	7.48	0.8689

Compare expression of checked genes

Potri.008G157750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.