Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60680 389 / 2e-135 AGD2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60750 382 / 3e-133 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60710 380 / 3e-132 ATB2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60730 380 / 6e-132 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2), NAD(P)-linked oxidoreductase superfamily protein (.3) AT1G60690 380 / 9e-132 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G10810 365 / 5e-126 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G04690 114 / 5e-29 KV-BETA1, KAB1 potassium channel beta subunit 1 (.1) AT4G33670 111 / 4e-28 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G06690 108 / 1e-26 NAD(P)-linked oxidoreductase superfamily protein (.1) AT5G53580 104 / 3e-25 AtPLR1 pyridoxal reductase 1, NAD(P)-linked oxidoreductase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G040000 [exp] 484 / 4e-173 AT1G60710 376 / 2e-130 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040100 [exp] 475 / 2e-169 AT1G60710 369 / 1e-127 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G052400 [exp] 450 / 1e-159 AT1G60680 395 / 1e-137 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.014G147700 [exp] 371 / 3e-128 AT1G60710 559 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234000 [exp] 369 / 2e-127 AT1G60690 524 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234201 [exp] 364 / 8e-126 AT1G60710 547 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G207100 [exp] 122 / 1e-31 AT1G06690 526 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G207000 [exp] 119 / 2e-30 AT1G06690 589 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G055500 [exp] 115 / 6e-29 AT1G06690 557 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041185 [exp] 554 / 0 AT1G60750 384 / 2e-133 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041184 [exp] 525 / 0 AT1G60690 374 / 1e-129 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10029615 [exp] 485 / 3e-173 AT1G60710 399 / 2e-139 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10006105 [exp] 382 / 2e-132 AT1G60690 554 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10037437 [exp] 377 / 6e-131 AT1G60690 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041272 [exp] 377 / 1e-130 AT1G60710 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10023701 [exp] 366 / 4e-126 AT1G60690 527 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041303 [exp] 293 / 1e-98 AT1G60690 419 / 1e-148 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10037408 [exp] 231 / 1e-74 AT1G60730 311 / 6e-106 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2), NAD(P)-linked oxidoreductase superfamily protein (.3) Lus10010566 [exp] 167 / 2e-51 AT1G10810 198 / 3e-64 NAD(P)-linked oxidoreductase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00248 [poplar] [flax] Aldo_ket_red Aldo/keto reductase family
Representative CDS sequence Show only first row Show all	>Potri.008G158300.3 pacid=42807439 polypeptide=Potri.008G158300.3.p locus=Potri.008G158300 ID=Potri.008G158300.3.v4.1 annot-version=v4.1 ATGGAGGAAAAGCCCCATATTCAAATCCCAAGAGTGAAACTGGGCAGTCAAGGATTAGAGGTTTCCAGATTGGGTTTTGGATGTGGGGGACTCTCTGGAA TTTATAATGCACCTCTCTCCCACGATGATGGATGCTTAATTTTAAAGGAAGTTTATTCTAGGGGTATCACTTTCTTTGACACATCGGATTTATATGGAGA TCATCATGACAATGAGTTCATGATTGGAAAGGCTTTAAAGCAGCTTCCTCGAGAAAAGATTCAATTAGCAACGAAATTTGGTATTATAAGGCTCGAAGGG TTCCAGTTCACAGTCAAAGGTACCCCAGAATATGTGCGGCAATGCTGTGAAGCTAGTCTTAAGCGCCTTGGTGTGGACTACATTGATCTGTATTATCAGC ATCGCGTGGACGTTTCAGTTCCAATAGAGGATACTATGGGAGAGCTGAAGAAACTAGTACAAGAAGGAAAGATTAAGTACGTTGGACTATCTGAAGCTAG TGTAGACACGATCAGGAGAGCACATGCTGTCCATCCTATAACAGCCGTGGAAATGGAGTACTCCCTATGGAGTCGTGAAATAGAAGAGGACGTACTTCCG ATCTGCCGAGAGCTTGGTATCGGGACAGTGGCATATAGCCCTCTTGGCCGGGGATTCTTTGCTGGGAAGGCAGTTGTGGAGAGCTTGCCCAATGAGAGTA CACTGGCTATGCATCCGCGGTTTTCTGCAGAAAATATTGAGAAAAACAAAGTTATATATGCTCGTCTTTCTGACTTGGCCTCAAAGCATGCCTGCACTCC ACCTCAACTAGCTCTGGCATGGCTTCTCCACCAGGGAGAGGACGTAATTCCAATTCCTGGGACAACTAAGCTGAAGAACCTTGATAACAATATTGGATCC TTGGCAGTGAAGCTAACACCAGAGGACTTGAAAGAAATTCTTGATGCTGTACCAGTTGATGAAGTGGGCGGTGAAAGAGAATATAGTGTGTTTTCTAATT ACATCTACAAGTTTGCCATTACCCCAGCCCAGTGA
AA sequence Show only first row Show all	>Potri.008G158300.3 pacid=42807439 polypeptide=Potri.008G158300.3.p locus=Potri.008G158300 ID=Potri.008G158300.3.v4.1 annot-version=v4.1 MEEKPHIQIPRVKLGSQGLEVSRLGFGCGGLSGIYNAPLSHDDGCLILKEVYSRGITFFDTSDLYGDHHDNEFMIGKALKQLPREKIQLATKFGIIRLEG FQFTVKGTPEYVRQCCEASLKRLGVDYIDLYYQHRVDVSVPIEDTMGELKKLVQEGKIKYVGLSEASVDTIRRAHAVHPITAVEMEYSLWSREIEEDVLP ICRELGIGTVAYSPLGRGFFAGKAVVESLPNESTLAMHPRFSAENIEKNKVIYARLSDLASKHACTPPQLALAWLLHQGEDVIPIPGTTKLKNLDNNIGS LAVKLTPEDLKEILDAVPVDEVGGEREYSVFSNYIYKFAITPAQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60680		AGD2	NAD(P)-linked oxidoreductase s...		Potri.008G158300 [exp]	0	1
					Potri.019G129200 [exp]	5.09	0.7075
AT2G48010		RKF3	receptor-like kinase in in flo...		Potri.005G040200 [exp]	14.49	0.7002
AT1G71950			Proteinase inhibitor, propepti...		Potri.019G083300 [exp]	23.51	0.6761
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Potri.002G132900 [exp]	26.36	0.6783
AT3G29170			Eukaryotic protein of unknown ...		Potri.006G053300 [exp]	30.85	0.6058
AT3G57710			Protein kinase superfamily pro...		Potri.013G020100 [exp]	37.94	0.6734
AT1G23160			Auxin-responsive GH3 family pr...		Potri.014G136800 [exp]	58.24	0.6204
AT1G19940		ATGH9B5	glycosyl hydrolase 9B5 (.1)		Potri.002G023900 [exp]	59.66	0.6465
AT3G52460			hydroxyproline-rich glycoprote...		Potri.016G071100 [exp]	60.76	0.6088
AT2G23810		TET8	tetraspanin8 (.1)		Potri.018G099800 [exp]	64.53	0.6483

Compare expression of checked genes

Potri.008G158300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.