Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22880 237 / 1e-78 ARLIM15, ATDMC1 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1) AT5G20850 130 / 4e-37 ATRAD51 RAS associated with diabetes protein 51 (.1) AT2G45280 39 / 0.0007 ATRAD51C RAS associated with diabetes protein 51C (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G081500 [exp] 291 / 1e-99 AT3G22880 613 / 0.0 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1) Potri.006G135200 [exp] 132 / 1e-37 AT5G20850 622 / 0.0 RAS associated with diabetes protein 51 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039383 [exp] 249 / 3e-83 AT3G22880 585 / 0.0 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1) Lus10006625 [exp] 249 / 5e-83 AT3G22880 582 / 0.0 ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, DNA repair (Rad51) family protein (.1) Lus10039928 [exp] 88 / 6e-21 AT5G20850 530 / 0.0 RAS associated with diabetes protein 51 (.1) Lus10027654 [exp] 88 / 1e-20 AT5G20850 531 / 0.0 RAS associated with diabetes protein 51 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF08423 [poplar] [flax] Rad51 Rad51
Representative CDS sequence Show only first row Show all	>Potri.008G158500.4 pacid=42806594 polypeptide=Potri.008G158500.4.p locus=Potri.008G158500 ID=Potri.008G158500.4.v4.1 annot-version=v4.1 ATGACCGCTACTCTTAAAGCTGAAGAGCAAAACCAGCTACAGCTGGTGGAGCGAGAAGAAATGGATGACGAAGACGATTTGTTCGAAGCCATCGACAAGT TGATCAATCAAGGTATTAATGCTGGAGATGTCAAGAAGCTTCAAGATGCAGGCATTTACACTTGCAATGGATTGATGATGTTCACGAAGAAGAACTTGAC AGGAATCAAAGGATTGTCTGAGGCTAAAGTTGACAAGATTTGTGAAGCTGCTGAAAAGATAGTGAATTATGGTTATATAACTGGAAGTGATGCTCTGCTC AAAAGGAAGTCTGTGATTCACATCACAACTGGAAGCCAAGCCCTGGATGAACTCTTAGGAGGTGGGGTTGAGACTTCGGCTATCACAGAAGCTTTTGGGG AATTCCGGTCCGGGAAGACACAGCTTGCTCATACTCTTTGTGTCTCTACACAGTGCAGCATAGGAGCACATCCAGGACTTTCTGCACCAATCCAATCTCT TCCTTCGTCGATCATTTAG
AA sequence Show only first row Show all	>Potri.008G158500.4 pacid=42806594 polypeptide=Potri.008G158500.4.p locus=Potri.008G158500 ID=Potri.008G158500.4.v4.1 annot-version=v4.1 MTATLKAEEQNQLQLVEREEMDDEDDLFEAIDKLINQGINAGDVKKLQDAGIYTCNGLMMFTKKNLTGIKGLSEAKVDKICEAAEKIVNYGYITGSDALL KRKSVIHITTGSQALDELLGGGVETSAITEAFGEFRSGKTQLAHTLCVSTQCSIGAHPGLSAPIQSLPSSII

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22880		ARLIM15, ATDMC1	ARABIDOPSIS THALIANA DISRUPTIO...		Potri.008G158500 [exp]	0	1
AT5G17620			unknown protein		Potri.013G072300 [exp]	3.16	0.9372
AT5G46850			unknown protein		Potri.003G095200 [exp]	6.00	0.9106
AT5G12260			unknown protein		Potri.012G121826 [exp]	6.00	0.9164
					Potri.003G104800 [exp]	10.53	0.9107
AT5G40645			RPM1-interacting protein 4 (RI...		Potri.001G338500 [exp]	12.24	0.9019
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Potri.001G080000 [exp]	12.32	0.8971
AT1G57790			F-box family protein (.1)		Potri.012G106800 [exp]	13.41	0.9076
AT5G39220			alpha/beta-Hydrolases superfam...		Potri.017G093500 [exp]	15.58	0.8763
AT5G65960			GTP binding (.1)		Potri.002G177100 [exp]	16.09	0.8995
AT1G64870			unknown protein		Potri.006G252800 [exp]	17.29	0.8863

Compare expression of checked genes

Potri.008G158500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.