Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04210 1172 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G63700 105 / 1e-22 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT5G66850 101 / 1e-21 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT1G53570 99 / 5e-21 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT2G24360 97 / 5e-21 Protein kinase superfamily protein (.1) AT4G08500 98 / 1e-20 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT4G31170 95 / 3e-20 Protein kinase superfamily protein (.1.2.3.4) AT1G62400 93 / 5e-20 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT3G50720 91 / 4e-19 Protein kinase superfamily protein (.1) AT5G01850 90 / 7e-19 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G081400 [exp] 1817 / 0 AT1G04210 1212 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G146700 [exp] 108 / 8e-24 AT1G63700 826 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.015G075200 [exp] 102 / 4e-23 AT1G62400 404 / 2e-141 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.002G129100 [exp] 104 / 1e-22 AT5G66850 441 / 5e-145 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.012G143900 [exp] 103 / 5e-22 AT1G63700 766 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.001G102900 [exp] 102 / 8e-22 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.014G035500 [exp] 101 / 2e-21 AT5G66850 453 / 4e-149 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.007G039800 [exp] 100 / 2e-21 AT5G66850 511 / 3e-173 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.018G001800 [exp] 99 / 2e-21 AT2G24360 663 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041180 [exp] 1317 / 0 AT1G04210 1159 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021899 [exp] 713 / 0 AT1G04210 609 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021898 [exp] 524 / 6e-177 AT1G04210 447 / 4e-148 Leucine-rich repeat protein kinase family protein (.1) Lus10027496 [exp] 108 / 1e-23 AT1G63700 855 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10014976 [exp] 108 / 2e-23 AT1G63700 704 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10000237 [exp] 101 / 2e-23 AT1G62400 313 / 3e-107 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10002374 [exp] 101 / 2e-23 AT1G62400 312 / 7e-107 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10042122 [exp] 103 / 4e-23 AT1G62400 404 / 7e-141 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10028038 [exp] 98 / 9e-21 AT4G08500 494 / 1e-169 MAPK/ERK kinase kinase 1 (.1) Lus10021766 [exp] 99 / 2e-20 AT5G66850 452 / 7e-148 mitogen-activated protein kinase kinase kinase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0125 [poplar] [flax] Peptidase_CA PF14381 [poplar] [flax] EDR1 Ethylene-responsive protein kinase Le-CTR1
Representative CDS sequence Show only first row Show all	>Potri.008G158600.3 pacid=42807118 polypeptide=Potri.008G158600.3.p locus=Potri.008G158600 ID=Potri.008G158600.3.v4.1 annot-version=v4.1 ATGCAGCCTTCCAATTCCACCGAATCCAATTCTAAGTCCACCGATAACCCCGAAAACCCTAAATCCCCAAAATCCCCCTCCACCGAATTCAATGCTACCG CCACGACCGTTACCGCCACCAGTGACAGCAGTTTTGAAAAAAACAGTGAAAATGTGGATGATGAAGTAGTTCTTGATGTTATAGGAAAAAGCCTGGAATT TGATTTATTAGAAAAAGCTGACGATTCAGTGGAGGGTTTGTATTTGTATAAAAATGCGTTTAGTTTGGTGCCCAAGTCCGTGGGGGGTTTAAAGAAACTG AGGACGCTCAAGTTTTTCGGGAATGAAGTGAATTTGTTTCCAGCGGAGTTTGGGAACTTGGTGGGATTGGAGTGCCTGCAAGTCAAAGTATCGTCGCCGG GTTTGAATGGGCTGAGTTTTAATAAATTGAAAGGTTTGAAAGAGCTTGAGCTTTCGAGAGTGCCTCCAAGACCTTCGGTTTTGACGATTTTGAGTGAGAT TTCTGGGATTAAGTGCTTGACAAAGCTCTCTGTTTGTCACTTCTCTGTAAGATATCTTCCTCCTGAAATCGGCTGCTTAAGTAATTTGGAGTTCTTGGAT CTTTCATTCAACAAGATTAAGAGTCTGCCAAATGAAATAACCTATTTAAATGCCTTGATATCATTAAAAGTATCTAATAATAAGTTAGTCGAACTACCCT CAAGTTTGTCCTCGTTGCAATTACTGGAGAGCTTGGACCTCTCAAATAACAGGCTGACATCATTGGGATCTCTTGAACTTACTTCAATGCATAACCTCCA GCATCTAAATCTTCAGTACAATAAGCTTCTTAGTTGTTGTCAAATACCTTCATGGATATGCTGCAATTTGGAAGGAAATGGCAAGGACTTGTCAAATGAT GAGTTCATTAGCTCATCAGTCGAAATGGATGTATACGAAACCTCCTTTCAGGAGGATGACAGAAAGTTTTCTTGTAATGAATGCGATGCAGGTTCCAATC ATTCTATGTCAAGCATAGTGACTGGGCCTTCATCAAACAGGTCATTTGCATCTCGGAGGTCTAGTAAGCGTTGGAAAAGACGCCATTATTTGCAGCAAAA AGCTCGTCAAGAACGATTAAACAACAGTAGGAAGTGGAAAGGTGAGGGGTGTGCTGAAGCTTTGGCTCTAAAGGAAAGTGAAAGTTTCAAATCGAACAAT CTAGATGTCCTTACCCCTGAGGTGCATGAAGGGGGCACATCAGATGTTGTAGGTGTGGATGATGACAATGAAAAAGTTGAACTTTCTGTTGAAGCTGAAG GAGAAAATCTGCATACCAGTGTTGAAGATGATAAAATCAGCTCAAAAAAAGTTTTTTCTGTGGAAAGCTGCTCATGCGATCTTGGGTCTATAAATAAAAG TGAGGAAGAAGTATGTTGCGTGCAAGATGAACCTTTAGCCTCTACACGGGATGAAGCTGCTAGTCAGGATGAAAGTTCATCTTCAGAAAAATCCAAAATC ACTTACAAGTCAAAAAGGCATCATGATAGGGATATTGATAATCCAAAGCCATGCAAATGTCGGAGACCAACAGAAGATAGCTCAAATTTTTCCTGTAAAT ATAGTGAACTTTCATTTTGCAGCATTGAGGACCGACTACCAGATGGCTTTTATGATGCAGGACGTGACCGACCTTTCATGCCACTGAGGAGATTTGAGCA AATTTTGCCTCTTGACTCACGTGAGGTCATTCTTTTGGACAGGGAGAAGGATGAACAGTTGGATGCAGTAGCTCTCTCTGCTCAAGCATTGGTGTTTCGT TTCAAGAGATCAAATGGTTCTACCAAGGAAAGAAATAAGGTTGCTGTTGATAACTTGCAGATTGCTTCATTGCTTGCACTTTTTGTTTCTGATCATTTTG GGGGCAGTGATAGAAGTGGTGCTGTTGAAAGGACTCGAAAAGCAGTGTCTGGTTCAAACTACAGGAAGCCTTTTGTTTGCACATGCCCAACTGGAAACAA TGAAAGTATTAGTTTAGCTGGTAAACAAGCTTTGGAAACTGTAGAAGATATTATTTTCTCTGATCTCTGTGAGAGATCTTTGCGATCTATTAAAGCAAGA CGAGGCTCCATTGTGATTCCTTTAGGGAGCTTGCAGTTTGGTGTTTGCAGACACAGAGCCTTGCTAATGAAGTATCTATGTGACCGAATGGATCCTCCAG TACCTTGTGAACTTGTCAGGGGTTACTTGGACTTCATGCCGCATGCCTGGAATGTCATTCTCAGAAGGAGGGGTGATTCATTGGTCCGGATGGTGGTGGA TGCATGCCATCCACATGATATCAGAGAAGAGACAGATCCAGAATATTTTTGCAGGTACATTCCTCTTAGTCGGACTAAAGTTCCCCTTTCAACCGAGAGC GTTCCTGGTCCTGGTTGTTCATTTCCTACCATGTCAACTTCTGACAAGATAGAAAAGGCGGGTTCCAGTACTCTTATTCGGTGCAAATTTGGATCGGTTG AAGCTGCAGCAAAGGTGCGTACTTTAGAGGTATGTGAGGCGTCAGCAGATGAAATTAGGAATTTTGAGTATATTTGTCTCGGAGAAGTAAGAATTTTAGG TGCTCTGCAACACTCTTGTATAGTTGAAATGTATGGACACCAGCTATCTTCAAAGTGGGTTCCATCAGAAGATGGAAATCCAGAACGCCGCATATTACAG TCTGTAATTCTTATGGAGTATGTTGATGGGGGATCTTTAAAGAATTATTTAGAAGAGGTATCTAAAACTGGCGAGAAGCATGTACCGGTGGAAATAGCAT TGTGTATAGCACGAGATGTTGCATGTGCATTGGCAGAGATTCACTCCAAAGACATAATTCATCGTGACATAAAAAGTGAAAACATTTTGATTGATTTAGA TGATACGAGAGCTGATGGCATGCCTGTAGTGAAGCTCTGTGATTTTGACAGAGCCGTGCCACGCAAGTCTTTCTTGCATACATGTTGTATTGCTCATAGA GGGATTGCACCTCCTGATGTTTGTGTAGGAACGCCACGCTGGATGGCACCTGAGGTTTTGCGTACAATGGATAAACGCAACACTTATGGTCTGGAAGTGG ACATTTGGTCATATGGATGCCTACTTCTGGAATTGTTGACTTTACAGGTCCCGTATGCTGGCTTACCTGAATCGCGCATACATGAGCTTCTACAGTCAGG TAAACGACCACCACTAACTGATGAGCTGGAGGCTTTGGGGTCCATGGACGAGCATTTGGTTACTCATTCTGGCTCAAATCCGGAGGGACCTGAGGCTCAA TCAGAAACATTGAGATTCCTTGTTGATTTATTCTGTCGATGCACCAAGGAAAATCCAGCTGACCGTCCCACAGCTTCAGATATTTACAAACTGTTGCTTG CACGCACAAGCATTCACTAG
AA sequence Show only first row Show all	>Potri.008G158600.3 pacid=42807118 polypeptide=Potri.008G158600.3.p locus=Potri.008G158600 ID=Potri.008G158600.3.v4.1 annot-version=v4.1 MQPSNSTESNSKSTDNPENPKSPKSPSTEFNATATTVTATSDSSFEKNSENVDDEVVLDVIGKSLEFDLLEKADDSVEGLYLYKNAFSLVPKSVGGLKKL RTLKFFGNEVNLFPAEFGNLVGLECLQVKVSSPGLNGLSFNKLKGLKELELSRVPPRPSVLTILSEISGIKCLTKLSVCHFSVRYLPPEIGCLSNLEFLD LSFNKIKSLPNEITYLNALISLKVSNNKLVELPSSLSSLQLLESLDLSNNRLTSLGSLELTSMHNLQHLNLQYNKLLSCCQIPSWICCNLEGNGKDLSND EFISSSVEMDVYETSFQEDDRKFSCNECDAGSNHSMSSIVTGPSSNRSFASRRSSKRWKRRHYLQQKARQERLNNSRKWKGEGCAEALALKESESFKSNN LDVLTPEVHEGGTSDVVGVDDDNEKVELSVEAEGENLHTSVEDDKISSKKVFSVESCSCDLGSINKSEEEVCCVQDEPLASTRDEAASQDESSSSEKSKI TYKSKRHHDRDIDNPKPCKCRRPTEDSSNFSCKYSELSFCSIEDRLPDGFYDAGRDRPFMPLRRFEQILPLDSREVILLDREKDEQLDAVALSAQALVFR FKRSNGSTKERNKVAVDNLQIASLLALFVSDHFGGSDRSGAVERTRKAVSGSNYRKPFVCTCPTGNNESISLAGKQALETVEDIIFSDLCERSLRSIKAR RGSIVIPLGSLQFGVCRHRALLMKYLCDRMDPPVPCELVRGYLDFMPHAWNVILRRRGDSLVRMVVDACHPHDIREETDPEYFCRYIPLSRTKVPLSTES VPGPGCSFPTMSTSDKIEKAGSSTLIRCKFGSVEAAAKVRTLEVCEASADEIRNFEYICLGEVRILGALQHSCIVEMYGHQLSSKWVPSEDGNPERRILQ SVILMEYVDGGSLKNYLEEVSKTGEKHVPVEIALCIARDVACALAEIHSKDIIHRDIKSENILIDLDDTRADGMPVVKLCDFDRAVPRKSFLHTCCIAHR GIAPPDVCVGTPRWMAPEVLRTMDKRNTYGLEVDIWSYGCLLLELLTLQVPYAGLPESRIHELLQSGKRPPLTDELEALGSMDEHLVTHSGSNPEGPEAQ SETLRFLVDLFCRCTKENPADRPTASDIYKLLLARTSIH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04210			Leucine-rich repeat protein ki...		Potri.008G158600 [exp]	0	1
AT4G04790			Tetratricopeptide repeat (TPR)...		Potri.011G133100 [exp]	1.00	0.9224
AT1G09730			Cysteine proteinases superfami...		Potri.017G044000 [exp]	1.41	0.9119
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Potri.007G071600 [exp]	2.82	0.9045
AT4G19440			Tetratricopeptide repeat (TPR)...		Potri.003G105700 [exp]	3.74	0.8804
AT5G53770			Nucleotidyltransferase family ...		Potri.001G400800 [exp]	4.00	0.8955
AT4G39160	MYB		Homeodomain-like superfamily p...		Potri.010G019600 [exp]	5.00	0.8977
AT2G45880	BZR	BAM7, BMY4	BETA-AMYLASE 4, beta-amylase 7...		Potri.014G083700 [exp]	5.74	0.8855
AT3G05380	MYB	ALY2, ATALY2	ARABIDOPSIS THALIANA ALWAYS EA...		Potri.013G020500 [exp]	5.91	0.8966
AT3G19895			RING/U-box superfamily protein...		Potri.008G085700 [exp]	6.24	0.8819
AT1G04210			Leucine-rich repeat protein ki...		Potri.010G081400 [exp]	6.48	0.8966

Compare expression of checked genes

Potri.008G158600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.