Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	APS1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22890 767 / 0 APS1 ATP sulfurylase 1 (.1) AT4G14680 753 / 0 APS3 Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1) AT5G43780 710 / 0 APS4 Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1) AT1G19920 669 / 0 ASA1, APS2 ATP SULFURYLASE ARABIDOPSIS 1, Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G081200 [exp] 894 / 0 AT3G22890 758 / 0.0 ATP sulfurylase 1 (.1) Potri.002G024200 [exp] 664 / 0 AT1G19920 758 / 0.0 ATP SULFURYLASE ARABIDOPSIS 1, Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1) Potri.005G237300 [exp] 649 / 0 AT1G19920 734 / 0.0 ATP SULFURYLASE ARABIDOPSIS 1, Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006629 [exp] 825 / 0 AT3G22890 769 / 0.0 ATP sulfurylase 1 (.1) Lus10039389 [exp] 709 / 0 AT4G14680 655 / 0.0 Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1) Lus10034513 [exp] 672 / 0 AT1G19920 744 / 0.0 ATP SULFURYLASE ARABIDOPSIS 1, Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1) Lus10033158 [exp] 666 / 0 AT1G19920 736 / 0.0 ATP SULFURYLASE ARABIDOPSIS 1, Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [poplar] [flax] HUP PF01747 [poplar] [flax] ATP-sulfurylase ATP-sulfurylase CL0178 [poplar] [flax] PUA PF14306 [poplar] [flax] PUA_2 PUA-like domain
Representative CDS sequence Show only first row Show all	>Potri.008G159000.3 pacid=42808063 polypeptide=Potri.008G159000.3.p locus=Potri.008G159000 ID=Potri.008G159000.3.v4.1 annot-version=v4.1 ATGGCTACCATGTCTGCCCTCTTCACCAAAACCTCATATCCTCCTCACTCTCTCCCAAAATCATTCAATACCCGTTTTAGCCCTACCCTCAAACTATCGT TTGCGCCCAAAATCCAATGGAAACGAGTCAGAATTCAATCCGGGTTGATCGACCCAGATGGTGGAAAACTTGTTGAACTATTCGTTGAAAAGTCGCAAAA AGATGCTAAAAAGAAAGAGGCAATTTCATTGCCTAAAGTGAAGTTAACAATGATTGATATTCAATGGCTGCATGTTTTGAGTGAAGGGTGGGCAAGTCCT CTCCGCGGATTCATGAGAGAATCCGAGTTCCTCCAAACTCTTCATTTCAACTCGCTCCGTTTGGAAAACGGGTCGGTTGTTAACATGTCGGTGCCTATTG TGCTCGCTATTGATGATTTGCAGAAGCAGAGCATTGGCGAGTCCAAGAGGGTTGCTCTTGTTGATTCAGATGACAATACTGTTGCCATCTTGAGCGATGT AGAGATATATAAGCACCCCAAAGAAGAACGGATTGCGAGAACATGGGGAACTACTGCCCCTGGTTTACCTTACGTTGAAGAAACCATAGCTGGATCTGGA AACTGGCTGATTGGAGGGGACTTGGAGGTGATAGAACCAATCAAGTATCATGATGGTCTCGATCATTTTCGATTGTCTCCTGCAGAACTCCGTGAAGAAT TCACTAGGCGCAATGCCGATGCTGTCTTTGCATTCCAGCTCAGGAATCCTGTGCACAATGGGCATGCTTTACTCATGACAGATACTCGTAGACGGCTTCT TGAGATGGGATACAAGAATCCCATCCTTTTGCTTCATCCATTGGGAGGCTACACAAAGGCAGATGATGTTCCACTTAGCTGGAGAATGAAGCAACATGTG AAGGTACTTGAGGATGGTGTTCTTGATCCAGAAACAACTGTGGTCTCAATATTCCCATCTCCCATGCACTATGCTGGTCCAACTGAGGTGCAGTGGCATG CAAAAGCTCGGATTAATGCAGGAGCTAACTTTTACATTGTCGGCAGGGATCCAGCTGGAATGAGCCATCCAGTTGAGAAAAGAGATTTATATGATGCTGA TCATGGAAAGAAGGTGTTGAGTGTGGCCCCTGGACTTGAGCGGTTAAACATCCTTCCTTTCAGGGTTGCTGCATATGACAAGACTCAGGGTAAAATGGCA TTCTTTGATCCCTCAAGGCCCGGAGACTTCCTCTTTATTTCTGGAACAAAGATGAGAACACTTGCAAAGAACAAAGAGAACCCTCCTGATGGATTCATGT GCCCTGGTGGCTGGAAAGTGTTGGTCGAATACTATGACAGTTTGAGTCTGGCAAACAACGGCAAAGTCCCAGAACCTGTTCCAGCTTAG
AA sequence Show only first row Show all	>Potri.008G159000.3 pacid=42808063 polypeptide=Potri.008G159000.3.p locus=Potri.008G159000 ID=Potri.008G159000.3.v4.1 annot-version=v4.1 MATMSALFTKTSYPPHSLPKSFNTRFSPTLKLSFAPKIQWKRVRIQSGLIDPDGGKLVELFVEKSQKDAKKKEAISLPKVKLTMIDIQWLHVLSEGWASP LRGFMRESEFLQTLHFNSLRLENGSVVNMSVPIVLAIDDLQKQSIGESKRVALVDSDDNTVAILSDVEIYKHPKEERIARTWGTTAPGLPYVEETIAGSG NWLIGGDLEVIEPIKYHDGLDHFRLSPAELREEFTRRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYKNPILLLHPLGGYTKADDVPLSWRMKQHV KVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMSHPVEKRDLYDADHGKKVLSVAPGLERLNILPFRVAAYDKTQGKMA FFDPSRPGDFLFISGTKMRTLAKNKENPPDGFMCPGGWKVLVEYYDSLSLANNGKVPEPVPA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22890		APS1	ATP sulfurylase 1 (.1)		Potri.008G159000 [exp]	0	1	APS1.2
AT2G36800		UGT73C5, DOGT1	UDP-GLUCOSYL TRANSFERASE 73C5,...		Potri.012G048700 [exp]	6.92	0.8290	Pt-GT4.1
AT5G58950			Protein kinase superfamily pro...		Potri.005G082200 [exp]	8.24	0.8207	Pt-PK1.1
AT3G01400			ARM repeat superfamily protein...		Potri.002G118800 [exp]	11.13	0.7962
AT4G33520		AtHMAC6, HMA6, ...	Arabidopsis thaliana heavy met...		Potri.001G205400 [exp]	15.96	0.8178
AT1G77840			Translation initiation factor ...		Potri.017G122200 [exp]	17.77	0.6969
AT3G12570		FYD	FYD (.1.2.3.4)		Potri.010G206400 [exp]	18.00	0.7734
AT1G18210			Calcium-binding EF-hand family...		Potri.012G048200 [exp]	18.97	0.7757	Pt-CBL1.1
AT5G14700			NAD(P)-binding Rossmann-fold s...		Potri.001G349600 [exp]	20.37	0.7958
AT2G30020			Protein phosphatase 2C family ...		Potri.010G187000 [exp]	21.21	0.7414
AT5G24600			Protein of unknown function, D...		Potri.015G001300 [exp]	21.49	0.7518

Compare expression of checked genes

Potri.008G159000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.