Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SCAM.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22930 236 / 1e-80 CML11 calmodulin-like 11 (.1) AT4G14640 229 / 2e-78 CAM8, AtCML8 calmodulin-like 8, calmodulin 8 (.1) AT2G27030 211 / 5e-71 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT3G56800 209 / 8e-71 ACAM-3, CAM3 calmodulin 3 (.1) AT2G41110 209 / 8e-71 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2) AT1G66410 209 / 1e-70 ACAM-4, CAM4 calmodulin 4 (.1.2) AT5G37780 209 / 1e-70 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3) AT3G43810 209 / 2e-70 CAM7 calmodulin 7 (.1) AT5G21274 207 / 5e-70 ACAM-6, CAM6 calmodulin 6 (.1) AT2G41090 137 / 1e-41 Calcium-binding EF-hand family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G080900 [exp] 251 / 2e-87 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.012G041000 [exp] 211 / 2e-71 AT5G37780 283 / 9e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.001G222200 [exp] 212 / 3e-71 AT2G27030 304 / 6e-107 calmodulin 5 (.1.2.3) Potri.006G026700 [exp] 209 / 2e-70 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.009G021500 [exp] 209 / 2e-70 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.016G024700 [exp] 209 / 2e-70 AT3G43810 300 / 2e-106 calmodulin 7 (.1) Potri.015G032600 [exp] 209 / 2e-70 AT5G37780 284 / 3e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.005G052800 [exp] 208 / 2e-70 AT4G14640 228 / 7e-78 calmodulin-like 8, calmodulin 8 (.1) Potri.013G040300 [exp] 189 / 7e-63 AT3G22930 210 / 1e-70 calmodulin-like 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039391 [exp] 241 / 3e-83 AT4G14640 268 / 1e-93 calmodulin-like 8, calmodulin 8 (.1) Lus10041288 [exp] 209 / 2e-70 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10037423 [exp] 209 / 2e-70 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10038981 [exp] 209 / 2e-70 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10027283 [exp] 209 / 2e-70 AT2G27030 300 / 2e-106 calmodulin 5 (.1.2.3) Lus10022589 [exp] 176 / 5e-57 AT3G43810 255 / 2e-88 calmodulin 7 (.1) Lus10009176 [exp] 169 / 1e-54 AT2G27030 186 / 3e-61 calmodulin 5 (.1.2.3) Lus10001775 [exp] 169 / 1e-54 AT2G27030 192 / 1e-63 calmodulin 5 (.1.2.3) Lus10021487 [exp] 166 / 2e-53 AT2G41110 255 / 1e-88 calmodulin 2 (.1.2) Lus10041179 [exp] 150 / 8e-48 AT4G14640 174 / 2e-57 calmodulin-like 8, calmodulin 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.008G159300.1 pacid=42808775 polypeptide=Potri.008G159300.1.p locus=Potri.008G159300 ID=Potri.008G159300.1.v4.1 annot-version=v4.1 ATGGCAGAGGTACTAACCGAAGAACAGATGGTTGAGTTCAAAGAAGCTTTTTGTCTGTTCGACAAGGATGGAGATGGTTGCATTACCATTGATGAACTGG CCACGGTCATTAGGTCACTGGATCAAAATCCAACCGAAGAAGAACTTCAGGATATGATCAGCGAAGTTGATTCGGATGGAAATGGGACCATAGAGTTTGC TGAGTTTTTAACTTTGATGGCCAAAAAAACGAAGGAGACTGATGCGGAGGAGGAGCTTAAAGAGGCGTTCAAAGTGTTTGACAAGGATCAGAATGGCTAT ATATCAGCTAATGAGTTGAGGCATGTTATGATCAATTTAGGTGAAAAGCTTACCGATGAGGAGGTGGATCAGATGATTAAAGAGGCTGATTTGGACGGTG ACGGCCAAGTTAATTACGACGAGTTTGTTAAAATGATGATGAACGTCGGGTGA
AA sequence Show only first row Show all	>Potri.008G159300.1 pacid=42808775 polypeptide=Potri.008G159300.1.p locus=Potri.008G159300 ID=Potri.008G159300.1.v4.1 annot-version=v4.1 MAEVLTEEQMVEFKEAFCLFDKDGDGCITIDELATVIRSLDQNPTEEELQDMISEVDSDGNGTIEFAEFLTLMAKKTKETDAEEELKEAFKVFDKDQNGY ISANELRHVMINLGEKLTDEEVDQMIKEADLDGDGQVNYDEFVKMMMNVG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22930		CML11	calmodulin-like 11 (.1)		Potri.008G159300 [exp]	0	1	Pt-SCAM.1
AT4G20780		CML42	calmodulin like 42 (.1)		Potri.006G112500 [exp]	4.58	0.8168
AT3G07600			Heavy metal transport/detoxifi...		Potri.014G171500 [exp]	4.69	0.8499
AT2G13650		GONST1	golgi nucleotide sugar transpo...		Potri.005G062900 [exp]	6.48	0.8021
AT3G12740		ALIS1	ALA-interacting subunit 1 (.1)		Potri.008G082100 [exp]	6.63	0.8640
AT2G15730			P-loop containing nucleoside t...		Potri.014G034300 [exp]	11.48	0.8429
AT1G66920			Protein kinase superfamily pro...		Potri.015G018200 [exp]	12.48	0.8406
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Potri.006G105300 [exp]	16.12	0.8368
					Potri.003G101900 [exp]	18.49	0.8241
AT5G50460			secE/sec61-gamma protein trans...		Potri.012G098400 [exp]	21.21	0.7633	SEC61.1
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Potri.004G148300 [exp]	30.01	0.7943

Compare expression of checked genes

Potri.008G159300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.