Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-APG1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63410 461 / 4e-164 VTE3, APG1, IEP37, E37 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G047100 [exp] 533 / 0 AT3G63410 508 / 0.0 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G215900 [exp] 523 / 0 AT3G63410 492 / 3e-176 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G188600 [exp] 43 / 0.0002 AT1G23360 354 / 2e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024832 [exp] 466 / 1e-165 AT3G63410 494 / 5e-177 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10018747 [exp] 469 / 5e-165 AT3G63410 494 / 1e-174 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10014711 [exp] 416 / 9e-147 AT3G63410 424 / 3e-150 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10003095 [exp] 140 / 1e-41 AT3G63410 136 / 1e-40 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10004090 [exp] 69 / 8e-14 AT3G63410 98 / 6e-25 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10011441 [exp] 42 / 0.0005 AT5G57300 475 / 2e-171 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10000179 [exp] 41 / 0.0005 AT5G57300 342 / 3e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10037553 [exp] 41 / 0.0009 AT5G57300 359 / 1e-125 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10029124 [exp] 41 / 0.001 AT1G23360 298 / 8e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08241 [poplar] [flax] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.008G159400.1 pacid=42805965 polypeptide=Potri.008G159400.1.p locus=Potri.008G159400 ID=Potri.008G159400.1.v4.1 annot-version=v4.1 ATGGCTTCTTTATTGCTCAATGGACCTCAAAATGTGAACTTCATTGGTGGCATAACCCCATCTGGGCTAGGTTTTGTAGGTTCAAATCTTCATGTTAGTT GTTTTTCGTCGAAAAATATAGTACCATGCCATAATAGGAATCAAAATTCAAGAATCTTAGCACCCAGATGTTCTTTATCATCTGCAAGGCCTGCTTCTCA GCCTAGGTTCATACAACACAAGAAAGAGGCATTTTGGTTCTATAGATTCCTGTCTATAGTGTATGATCATATCATTAACCCTGGTCATTGGACTGAGGAT ATGAGGGATGAGGCACTTGAGCCTGCTGACCTCTATGATAGGAGGATGACAGTGGTAGATGTCGGTGGTGGTACTGGGTTCACTACTTTGGGTATTGTTA AACATGTGGATGCCAAGAATGTTACAATTCTAGACCAGTCACCTCACCAGCTTGCTAAGGCTAAGCAGAAGAAGCCCTTGAAGGAATGCAAGATAATTGA AGGGGATGCTGAGGATCTTCCCTTCCCTACTGATTATGCAGATCGTTATGTATCCGCTGGAAGTATTGAGTACTGGCCGGATCCCCAACGTGGCATCAAA GAAGCATACAGAGTGCTGAAAATAGGAGGGAAAGCATGTATTATAGGTCCCGTCTACCCAACCTTCTGGCTGTCTAGATTTTTTGCTGATGTGTGGATGC TCTTCCCAAAAGAGGAAGAGTACATTGAATGGTTTAAAAAGGCTGGATTTAAAGATGTTAAACTGAAAAGGATTGGTCCAAAATGGTATCGTGGTGTCCG TCGGCATGGTTTGATAATGGGTTGCTCTGTGACTGGCGTAAAGCCACTATCAGGAGACTCTCCCCTGCAGCTTGGTCCAAAGGCAGAGGAGATTGAGAAG CCAGTGAATCCATTGGTGTTCCTTATGCGATTCATTCTCGGGGCAATGGCAGCAACATACTTTATTCTGGTTCCAATTTACATGTGGCTCAAAGATCAAA TTGTCCCAAAGGGCATGCCTATATGA
AA sequence Show only first row Show all	>Potri.008G159400.1 pacid=42805965 polypeptide=Potri.008G159400.1.p locus=Potri.008G159400 ID=Potri.008G159400.1.v4.1 annot-version=v4.1 MASLLLNGPQNVNFIGGITPSGLGFVGSNLHVSCFSSKNIVPCHNRNQNSRILAPRCSLSSARPASQPRFIQHKKEAFWFYRFLSIVYDHIINPGHWTED MRDEALEPADLYDRRMTVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKKPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIK EAYRVLKIGGKACIIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFKKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPLSGDSPLQLGPKAEEIEK PVNPLVFLMRFILGAMAATYFILVPIYMWLKDQIVPKGMPI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Potri.008G159400 [exp]	0	1	Pt-APG1.1
AT4G39230			NmrA-like negative transcripti...		Potri.013G104000 [exp]	1.41	0.9800
AT5G54270		LHCB3*1, LHCB3*...	light-harvesting chlorophyll B...		Potri.011G126700 [exp]	2.44	0.9759
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Potri.018G109700 [exp]	4.24	0.9755	Pt-ALDH11.1
AT1G67090		RBCS1A	ribulose bisphosphate carboxyl...		Potri.017G114600 [exp]	6.92	0.9710
AT5G54270		LHCB3*1, LHCB3*...	light-harvesting chlorophyll B...		Potri.001G407100 [exp]	7.74	0.9725	Lhcb3-1,LHCB3.2
AT4G14890		FdC2	ferredoxin C 2, 2Fe-2S ferredo...		Potri.010G087300 [exp]	8.71	0.9726
AT1G58684			Ribosomal protein S5 family pr...		Potri.001G256800 [exp]	9.53	0.9707
AT1G75690		LQY1	LOW QUANTUM YIELD OF PHOTOSYST...		Potri.002G023600 [exp]	9.94	0.9652
AT2G21280		GC1, ATSULA	GIANT CHLOROPLAST 1, NAD(P)-bi...		Potri.009G124800 [exp]	10.00	0.9658	GC1.1
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Potri.002G145100 [exp]	10.39	0.9680

Compare expression of checked genes

Potri.008G159400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.