Plant FIBer expression Database

Potri.008G159500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G55760 561 / 0 unknown protein
AT1G42430 197 / 3e-57 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G249700
[exp]
195 / 4e-56 AT1G42430 609 / 0.0 unknown protein
Potri.002G011300
[exp]
187 / 2e-53 AT1G42430 589 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021897
[exp]
535 / 0 AT3G55760 538 / 0.0 unknown protein
Lus10034575
[exp]
196 / 2e-56 AT1G42430 598 / 0.0 unknown protein
Lus10021819
[exp]
195 / 3e-56 AT1G42430 597 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Potri.008G159500.3 pacid=42805936 polypeptide=Potri.008G159500.3.p locus=Potri.008G159500 ID=Potri.008G159500.3.v4.1 annot-version=v4.1
ATGGCGGCCAGTCTCGGCGCCTACACACGCGCGACCCCACGCGCCTCCCTCTTCTCCAATACCAGAACCTCCTTTGTTATACAGTCCCCACCATTCCTTA
GCATAACAAGAACCACCAAAATCACTAGAATTAGGGTTTCAAATGATGGCAGTAACTCCTACCTGGACATGTGGAAAACGGCTGTTGATCGCGAGAGGAA
GACCGTCGAGTTCCAACAAATCGCTGGAAATTTAGCTCAAACCGATAATGACAGTGATGATGATGATGATGATGTTACTGTTGATTTGGAGAAGAAGAGC
GAGGACTTCAATAAGATCCTTGAAGTCTCCAAGGAGGAGAGGGACCGCATTCAGCGTGTGCAAGTCATTGATCGTGCCGCGGCGGCCATTGCGGCAGCTC
GCGATATTGTCAGGGAAAAAAAGTCCGCTGATAAGGATTTCAAGAGTCACGAAAGCATGGGTGGGGAAGTGGAAGATCAACAAGGAGCAGGAACAGAGAG
TAGGAGCATCTTGGTGTCTCGATCTGAGTCTTCTGCAGATGGAGTTCCTGGTCCAGATTTTTGGTCCTGGACTCCTCCTCTCAGCAGTGATGGAAATTCA
GATGATTCCAGCGATGTGCTGAAAGTTAGGAAATCTTCAGATACTCCTTTGACCATCCCAGTTGCAATGAAAGAGCGATCTGCGGATTTTCTCTCAATTC
CATTTGAGAGCAAACTTTTAGATACGAACCACAGTTCTCCTATACCTCCACTGCAGTCATTAGTTGAGGTTGAAGGAGTAGAGGTCTCTGAATCCATTCT
AGAAATGCCTTCTAAAAACGAGGAAGAACGTGAACTTGGAGTCCAATTTTCAGCATATGCAGCAGAAGCAGCACATGCTCTTGAGAAAGATAAGGTTGAT
GAGTTGTCATCCTATGGAGTGACTGCAGATGGATCAAGGTGTTGGAGGGAGACAGGAATTGAGCAAAGGCCTGATGGTGTAATTTGCAGGTGGACGATGA
CCAGGGGGGTCAGTGCTGACCAAGAGGTCGAGTGGCAAGAAAAGTTCTGGGAAGCTGCTGATGATTTTGGCTACAAGGAACTTGGTTCAGAGAAATCAGG
GCGTGATGCAACTGGAAATGTGTGGCGCGAGTTTTGGAGGGAATCAATGCGGCAGGAATCTGGGCTTTTGCATCTTGAAAAAACTGCAGACAAGTGGGGG
AAGAATGGACAAGGTGACGAGTGGCAAGAGAAATGGTGGGAACATTATGGTGCATCTGGTCAAGCGGAGAAATGGGCTCATAAGTGGTGCAGTATTGATC
CAACCACAAACCTTGAGGCTGGTCATGCTCATGTTTGGCATGAAAGGTGGGGCGAGAAGTATGATGGACATGGAGGCAGCACAAAATATACTGATAAATG
GGCTGAGCGCTGTGAGGGTGATGGTTGGGCGAAGTGGGGTGACAAGTGGGATGAAAATTTTGATCTAAATGGTCATGGTGTCAAGCAAGGGGAGGCATGG
TGGGAGGGAAAACATGGAGAGCGGTGGAACCGCACTTGGGGTGAGCGTCACAATGGTTCTGGATGGGTTCACAAGTATGGGAAGAGCAGCTGTGGGGAGC
ACTGGGACACACATACCCAGCAAGATACATGGTATGAAAGATTCCCACACTATGGTTTCTATCACTGCTTTGAAAACTCAGTCCAGCTCCGGGAAGTTCA
GAAGCCATCGGAGATAGATGAACAATGA
AA sequence
>Potri.008G159500.3 pacid=42805936 polypeptide=Potri.008G159500.3.p locus=Potri.008G159500 ID=Potri.008G159500.3.v4.1 annot-version=v4.1
MAASLGAYTRATPRASLFSNTRTSFVIQSPPFLSITRTTKITRIRVSNDGSNSYLDMWKTAVDRERKTVEFQQIAGNLAQTDNDSDDDDDDVTVDLEKKS
EDFNKILEVSKEERDRIQRVQVIDRAAAAIAAARDIVREKKSADKDFKSHESMGGEVEDQQGAGTESRSILVSRSESSADGVPGPDFWSWTPPLSSDGNS
DDSSDVLKVRKSSDTPLTIPVAMKERSADFLSIPFESKLLDTNHSSPIPPLQSLVEVEGVEVSESILEMPSKNEEERELGVQFSAYAAEAAHALEKDKVD
ELSSYGVTADGSRCWRETGIEQRPDGVICRWTMTRGVSADQEVEWQEKFWEAADDFGYKELGSEKSGRDATGNVWREFWRESMRQESGLLHLEKTADKWG
KNGQGDEWQEKWWEHYGASGQAEKWAHKWCSIDPTTNLEAGHAHVWHERWGEKYDGHGGSTKYTDKWAERCEGDGWAKWGDKWDENFDLNGHGVKQGEAW
WEGKHGERWNRTWGERHNGSGWVHKYGKSSCGEHWDTHTQQDTWYERFPHYGFYHCFENSVQLREVQKPSEIDEQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G55760 unknown protein Potri.008G159500
[exp]
0 1
AT4G09020 ATISA3, ISA3 isoamylase 3 (.1) Potri.002G100900
[exp]
1.00 0.8432
AT1G11380 PLAC8 family protein (.1) Potri.004G026700
[exp]
3.74 0.8074
AT2G01080 Late embryogenesis abundant (L... Potri.001G208000
[exp]
4.47 0.8194
AT1G34260 FAB1D FORMS APLOID AND BINUCLEATE CE... Potri.013G116400
[exp]
5.83 0.7872
AT3G29320 PHS1 alpha-glucan phosphorylase 1, ... Potri.004G123600
[exp]
8.00 0.7900 PHO1.2
AT2G46550 unknown protein Potri.002G173200
[exp]
9.16 0.7908
AT5G41620 unknown protein Potri.002G166600
[exp]
9.48 0.7903
AT5G03650 SBE2.2 starch branching enzyme 2.2 (.... Potri.005G251000
[exp]
14.28 0.7598
AT2G23210 UDP-Glycosyltransferase superf... Potri.009G095550
[exp]
16.61 0.7919
AT1G80490 TPR1 TOPLESS-related 1 (.1.2) Potri.006G257900
[exp]
16.79 0.8197

Potri.008G159500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.