Plant FIBer expression Database

Potri.008G159600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.008G159600.1 pacid=42807845 polypeptide=Potri.008G159600.1.p locus=Potri.008G159600 ID=Potri.008G159600.1.v4.1 annot-version=v4.1
ATGTCCGCTTCGGTGTCTGCAATATCATCCAACCTCGTGAAGAAAGCCATCCCATTTTCTACACCAAACTCGGCCGTAGTAAGAACTTTAAATAGAAAGA
TTATCAAGAGCCATGTTTATGGAAAACCAGGCCTTATCTCGCTTGTATGTCGATTACTAGTCCATAACCAATCTAATATTCCGCCTGAGATTCCAGGCAA
GAACCCACTAGAATTTCTGAGAAGGTACTCTAATAATAACGATCCGCCTTCAGTTCCACCAGAAGTACCAGAACTTCCAAGCAGTCCTGAGATCGAGACT
AGTCCATCAGATGAAGGACACATAAGACCTCCAAGGATTCCAGAGGTGCCTAATACCGGACCTGACTTCCCTGTTCCAGTACCGTTACCAACGCCTCCTG
ACGTTCCCGGGGACACCTTGGCCTCCGCCTCCAAATCGACTGCCCCCCGAGTTGCCGCCTGA
AA sequence
>Potri.008G159600.1 pacid=42807845 polypeptide=Potri.008G159600.1.p locus=Potri.008G159600 ID=Potri.008G159600.1.v4.1 annot-version=v4.1
MSASVSAISSNLVKKAIPFSTPNSAVVRTLNRKIIKSHVYGKPGLISLVCRLLVHNQSNIPPEIPGKNPLEFLRRYSNNNDPPSVPPEVPELPSSPEIET
SPSDEGHIRPPRIPEVPNTGPDFPVPVPLPTPPDVPGDTLASASKSTAPRVAA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.008G159600
[exp]
0 1
AT1G74110 CYP78A10 "cytochrome P450, family 78, s... Potri.001G054800
[exp]
2.82 0.8837
AT5G42270 FTSH5, VAR1 VARIEGATED 1, FtsH extracellul... Potri.005G249200
[exp]
14.49 0.8602 Pt-FTSH2.1
AT2G29650 PHT4;1, ANTR1 anion transporter 1, phosphate... Potri.009G043800
[exp]
16.91 0.8759
AT1G54570 Esterase/lipase/thioesterase f... Potri.013G033600
[exp]
18.08 0.8732
AT5G56350 Pyruvate kinase family protein... Potri.013G060400
[exp]
18.49 0.8546
AT1G52855 unknown protein Potri.011G124800
[exp]
20.49 0.8717
AT1G54570 Esterase/lipase/thioesterase f... Potri.005G046700
[exp]
32.49 0.8553
AT4G17670 Protein of unknown function (D... Potri.001G148700
[exp]
36.66 0.7596
AT5G64620 ATC/VIF2, C/VIF... cell wall / vacuolar inhibitor... Potri.003G122000
[exp]
39.33 0.8337
AT3G51860 CAX1-LIKE, ATHC... cation exchanger 3 (.1) Potri.016G115500
[exp]
44.74 0.8484 CAX3.2

Potri.008G159600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.