Plant FIBer expression Database

Potri.008G159900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G22990 577 / 0 LFR LEAF AND FLOWER RELATED, ARM repeat superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039398
[exp]
679 / 0 AT3G22990 605 / 0.0 LEAF AND FLOWER RELATED, ARM repeat superfamily protein (.1)
Lus10006635
[exp]
674 / 0 AT3G22990 602 / 0.0 LEAF AND FLOWER RELATED, ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence
>Potri.008G159900.1 pacid=42806136 polypeptide=Potri.008G159900.1.p locus=Potri.008G159900 ID=Potri.008G159900.1.v4.1 annot-version=v4.1
ATGCAGAAGCGGGACCTGAACAAGTCCGGTGGCTCAGGGGGCGGATCAGCAGCCCCAGCACCTAAGAGAGGGCGCCCCTTCGGCAGCACAAGCGGCAGCG
CCGCCGCCTCATTTGCTGCAGATTTTGTAGCACCGTCCACTCTCCTCGGTCCTTCACTTCAAGTTCACACCTCATTCGCCGCTTCAGATCAGAATAATAA
AAGAATAGTACTGGCACTTCAAAGTGGATTGAAGAGCGAGTTAACATGGGCACTCAACACTCTCACATTGCTTTCTTTCAAAGAAAAAGAAGACATGCGC
AAAGACTCTCTCGCTAAAATATCTGGCTTGCTTGATGCTCTTCTTCAAGTCATAGATGACTGGCGTGATATTGCGCTTCCCAAAGAACTCCAGAAGACTC
GTAGAGTAAGAACATTAGGTTCTAATTCGCTTGTTACAGGATTTGGTTACGAGTACGAGGCATTGGGATCAAATGACAATGTCAAGCAATCTGGATTGAC
GGATGCTTCTGTGCAAAAGAATGTAGCCAAATTTCGTCCTTCAGAGTGGTGGTATGACGAGGATGGTTTGTTTAATTTAGATGATGAAGGGAGGGCAGAG
AAGCAGCAGTGTGCTGTGGCTGCTTCAAATATCATACGCAATTTCTCTTTCATGCCAGAGAATGAAGTTATTATGGCTGCCAATCGGCATTGCTTGGAAA
CAGTGTTCCAGTGCATAGAGGATCACAGTACTGAGGATGAGGAACTTGTTACGAATGCCCTCGAGACAATTGTAAATTTGGCTCCGTTGCTTGATCTCCG
AATTTTTAGCTCCTCAAAGCCATCTTACATCAAAATAACAGAAAAACGTGCAGTACAAGCAATCATGGGGATGCTGGGATCTGCAGTTAAAGCCTGGCAC
TGTGCAGCTGCTGAATTACTAGGGCGTTTGATTATAAATCCTGACAATGAACCTTTCCTTCTTCCCTTTTTCCCACAGATACATAAGCGTTTAGTAGATC
TTATGAGCTCACCTGCACTTGATGCCCAGGCAGCTGCTGTTGGCGCTCTTTATAACCTTGCAGAAGTTAATATGGACTGCAGATTGAAGCTTGCTAGTGA
GCGATGGGCAGTTGATCGATTGCTTAGAGTGATTCGGGCGCCACATCCTGTACCAGAAGTTTGCAGGAAAGCGGCGATGATATTGGAGAGTCTGGTCTCC
GAGCCACAAAACAAGGCTTTGCTACTAGCTTACGAGAACGCATTTGCTGAGATTCTCTTCTCAGATACAAGATATTCTGATACATTTGCCAGAATATTAT
ATGAACTGACGTCCAGACCAAGTAACAAATTCACAGCAGCTCGTGGTGTTTGGGGCATGTGA
AA sequence
>Potri.008G159900.1 pacid=42806136 polypeptide=Potri.008G159900.1.p locus=Potri.008G159900 ID=Potri.008G159900.1.v4.1 annot-version=v4.1
MQKRDLNKSGGSGGGSAAPAPKRGRPFGSTSGSAAASFAADFVAPSTLLGPSLQVHTSFAASDQNNKRIVLALQSGLKSELTWALNTLTLLSFKEKEDMR
KDSLAKISGLLDALLQVIDDWRDIALPKELQKTRRVRTLGSNSLVTGFGYEYEALGSNDNVKQSGLTDASVQKNVAKFRPSEWWYDEDGLFNLDDEGRAE
KQQCAVAASNIIRNFSFMPENEVIMAANRHCLETVFQCIEDHSTEDEELVTNALETIVNLAPLLDLRIFSSSKPSYIKITEKRAVQAIMGMLGSAVKAWH
CAAAELLGRLIINPDNEPFLLPFFPQIHKRLVDLMSSPALDAQAAAVGALYNLAEVNMDCRLKLASERWAVDRLLRVIRAPHPVPEVCRKAAMILESLVS
EPQNKALLLAYENAFAEILFSDTRYSDTFARILYELTSRPSNKFTAARGVWGM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G22990 LFR LEAF AND FLOWER RELATED, ARM r... Potri.008G159900
[exp]
0 1
AT5G42655 Disease resistance-responsive ... Potri.002G131500
[exp]
7.54 0.7261
AT2G18500 OFP ATOFP7, OFP7 ARABIDOPSIS THALIANA OVATE FAM... Potri.007G028000
[exp]
16.00 0.7180
AT5G19350 RNA-binding (RRM/RBD/RNP motif... Potri.009G054400
[exp]
23.36 0.6906
AT3G49910 Translation protein SH3-like f... Potri.005G082600
[exp]
26.66 0.7214 Pt-RPL26.1
AT5G58030 Transport protein particle (TR... Potri.006G187300
[exp]
34.74 0.6514
AT3G07190 B-cell receptor-associated pro... Potri.002G245300
[exp]
35.29 0.6864
AT1G56050 GTP-binding protein-related (.... Potri.011G143700
[exp]
44.24 0.6654
AT4G31550 WRKY ATWRKY11, WRKY1... WRKY DNA-binding protein 11 (.... Potri.006G072400
[exp]
46.43 0.6052
AT1G54610 Protein kinase superfamily pro... Potri.013G032200
[exp]
51.23 0.6061
AT4G25300 2-oxoglutarate (2OG) and Fe(II... Potri.009G025900
[exp]
83.70 0.5713

Potri.008G159900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.