Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26640 822 / 0 KCS11 3-ketoacyl-CoA synthase 11 (.1) AT1G04220 813 / 0 KCS2 3-ketoacyl-CoA synthase 2 (.1) AT5G43760 778 / 0 KCS20 3-ketoacyl-CoA synthase 20 (.1) AT1G19440 684 / 0 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT2G16280 676 / 0 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT1G01120 654 / 0 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT1G68530 630 / 0 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT4G34510 618 / 0 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT1G25450 612 / 0 KCS5, CER60 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) AT2G26250 593 / 0 KCS10, FDH FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G079300 [exp] 964 / 0 AT2G26640 793 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079400 [exp] 964 / 0 AT2G26640 793 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.006G249200 [exp] 835 / 0 AT2G26640 886 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.018G032200 [exp] 835 / 0 AT2G26640 867 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G080200 [exp] 810 / 0 AT2G26640 759 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079500 [exp] 808 / 0 AT2G26640 758 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G080400 [exp] 807 / 0 AT2G26640 759 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079700 [exp] 806 / 0 AT2G26640 756 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.009G116700 [exp] 694 / 0 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006637 [exp] 842 / 0 AT1G04220 819 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10041177 [exp] 818 / 0 AT1G04220 782 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10019446 [exp] 797 / 0 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Lus10043300 [exp] 793 / 0 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Lus10021895 [exp] 747 / 0 AT1G04220 694 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10039399 [exp] 702 / 0 AT1G04220 689 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10042318 [exp] 690 / 0 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10026345 [exp] 689 / 0 AT1G19440 889 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10002691 [exp] 679 / 0 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10030209 [exp] 679 / 0 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [poplar] [flax] Thiolase PF08392 [poplar] [flax] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein CL0046 [poplar] [flax] Thiolase PF08541 [poplar] [flax] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Potri.008G160000.1 pacid=42806737 polypeptide=Potri.008G160000.1.p locus=Potri.008G160000 ID=Potri.008G160000.1.v4.1 annot-version=v4.1 ATGGCAGAGGATCAGAGCAAACAAAAACCGAAACCAGAATCAGTCACAGTTGATGCTGAGACGAAGAGAAACAGGCTCCCATACTTTCTCTTATCAGTTA GACTCAAATATGTGAAGCTTGGTTATCATTATTTAATCTCTAGTGCCATGTATCTCTTGCTTGTTCCACTCCTATTCATTGCATCAGCTCATCTTTCAAC ACTCACTATCCGAGATTTTGTCCAGCTATGGAACCACCTCAAGTTCAATTTTGTCTCAGTAACTCTGTGCTCAGGTCTTGTAGTTTTCTTGGCTACTCTC TACTTCATGAGCCGTCCTAGAAAAATATTCTTGGTGGATTTTGCATGTTACAAGCCTGAACCTGCTCGAATGTGCACCAGAGAAACTTTCATGGAGAAAT CAGCAGTAGCAGGCTGCTTCAGTGAAGAGAACCTGGCCTTTCAAAAGAAGATCCTCGAGAGGTCTGGTTTAGGACAGAACACTTACTTCCCCGAGGCTGT GATGCGGGTCACACCAAGGCCGTGCATGGAGGACGCAAGGAAGGAGGCTGAGATGGTGATGTTTGGAGCCATTGATGAGCTCTTGGCCAAAACTGGGGTT AAAGCTAAGGATATAGGTGTTCTTATAGTGAACTGCAGTTTGTTCAACCCAACCCCTTCTCTCTCTGCTATGGTAATCAATCATTACAAGCTTAGAGGGA ACATATTGAGCTACAATCTTGGCGGTATGGGTTGCAGTGCTGGGCTTATTTCCATCGATCTCGCCAAGCAGCTTTTGCAGGTGCTCCCCAATTCCTATGC CCTGGTGATCAGTATGGAGAACATCACTCTTAATTGGTACTTCGGCAATGACCGCTCCATGCTTGTCTCCAACTGCTTATTCCGTATGGGTGGTGCCGCA ATCCTTCTCTCCAACCGACCATCCGATCGCCGCCGCTCAAAGTATCAACTAATCCACACTGTTCGCACACACAAAGGTGCCGATGACAAGTGTTACAATT GTGTCTTCCAAAAGGAGGATGACACCAAAAGAATTGGTGTCTCACTTTCTAAAGACCTTATGGCTGTTGCGGGGGAAGCTCTCAAAACCAATATTACTAC ACTAGGGCCATTGGTACTTCCCATGTCAGAACAGCTCCTATTTTTTGCAACTTTAGTAGGAAGGAAGATCTTTAAACTGAACATAAAACCATACATTCCT GATTTCAAGTTGGCTTTTGAACACTTCTGCATTCATGCTGGAGGGAGAGCTGTGTTAGATGAACTAGAGAAAAACCTTGAGCTCTCTGATTGGCATATGG AGCCTTCAAGAATGACTCTTTATAGGTTTGGTAACACCTCTAGTAGTTCGTTGTGGTATGAATTGGCTTACTCTGAGGCCAAAGGAAGAATTAGGAAGGG TGATAGAACTTGGCAGATTGCTTTCGGTTCAGGATTCAAGTGTAACAGTGCGGTGTGGTATGCATTGAGGACGATCAATCCGGCAAAAGAGAAGAATCCC TGGATTGATGAGATTGACGAATTCCCTGTTCATGTGCCTAAAGTGGTGTCCATTGCTTCTTGA
AA sequence Show only first row Show all	>Potri.008G160000.1 pacid=42806737 polypeptide=Potri.008G160000.1.p locus=Potri.008G160000 ID=Potri.008G160000.1.v4.1 annot-version=v4.1 MAEDQSKQKPKPESVTVDAETKRNRLPYFLLSVRLKYVKLGYHYLISSAMYLLLVPLLFIASAHLSTLTIRDFVQLWNHLKFNFVSVTLCSGLVVFLATL YFMSRPRKIFLVDFACYKPEPARMCTRETFMEKSAVAGCFSEENLAFQKKILERSGLGQNTYFPEAVMRVTPRPCMEDARKEAEMVMFGAIDELLAKTGV KAKDIGVLIVNCSLFNPTPSLSAMVINHYKLRGNILSYNLGGMGCSAGLISIDLAKQLLQVLPNSYALVISMENITLNWYFGNDRSMLVSNCLFRMGGAA ILLSNRPSDRRRSKYQLIHTVRTHKGADDKCYNCVFQKEDDTKRIGVSLSKDLMAVAGEALKTNITTLGPLVLPMSEQLLFFATLVGRKIFKLNIKPYIP DFKLAFEHFCIHAGGRAVLDELEKNLELSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIRKGDRTWQIAFGSGFKCNSAVWYALRTINPAKEKNP WIDEIDEFPVHVPKVVSIAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.008G160000 [exp]	0	1
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Potri.002G178000 [exp]	1.41	0.9512	Pt-KCS1.1
AT1G77020			DNAJ heat shock N-terminal dom...		Potri.002G074600 [exp]	2.64	0.9079
AT1G34110			Leucine-rich receptor-like pro...		Potri.005G198000 [exp]	2.82	0.9272
AT5G67390			unknown protein		Potri.005G145800 [exp]	2.82	0.9058
AT5G12970			Calcium-dependent lipid-bindin...		Potri.003G210801 [exp]	3.00	0.9404
AT5G41040			HXXXD-type acyl-transferase fa...		Potri.015G100800 [exp]	4.24	0.8990
AT5G20950			Glycosyl hydrolase family prot...		Potri.019G037400 [exp]	4.24	0.8782
AT3G43720			Bifunctional inhibitor/lipid-t...		Potri.009G158100 [exp]	4.47	0.8969
AT2G41540		GPDHC1	6-phosphogluconate dehydrogena...		Potri.006G046900 [exp]	4.89	0.8905
AT4G24140		BDG3	alpha/beta-Hydrolases superfam...		Potri.003G147400 [exp]	6.70	0.9181

Compare expression of checked genes

Potri.008G160000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.