Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CIPK4.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23000 399 / 9e-137 PKS7, ATSRPK1, ATSR2, CIPK7, SnRK3.10 SNF1-RELATED PROTEIN KINASE 3.10, CBL-interacting protein kinase 7 (.1) AT4G14580 397 / 7e-136 CIPK4, SnRK3.3 SNF1-RELATED PROTEIN KINASE 3.3, CBL-interacting protein kinase 4 (.1) AT5G01810 304 / 1e-99 ATPK10, SnRK3.1, SIP2, PKS3, CIPK15 SNF1-RELATED PROTEIN KINASE 3.1, SOS3-INTERACTING PROTEIN 2, PROTEIN KINASE 10, CBL-interacting protein kinase 15 (.1.2.3) AT5G45820 301 / 2e-98 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT4G30960 288 / 2e-93 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT2G30360 288 / 2e-93 PKS5, CIPK11, SnRK3.22, SIP4 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) AT5G21326 287 / 9e-93 Ca2+regulated serine-threonine protein kinase family protein (.1) AT1G01140 286 / 2e-92 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT1G30270 286 / 4e-92 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT5G25110 285 / 1e-91 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G079000 [exp] 579 / 0 AT3G23000 402 / 6e-138 SNF1-RELATED PROTEIN KINASE 3.10, CBL-interacting protein kinase 7 (.1) Potri.016G133500 [exp] 310 / 2e-101 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G048800 [exp] 297 / 1e-96 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.013G156000 [exp] 295 / 9e-96 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.018G108500 [exp] 290 / 3e-94 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.019G127500 [exp] 289 / 2e-93 AT5G58380 641 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.006G186200 [exp] 288 / 3e-93 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.011G067500 [exp] 288 / 4e-93 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Potri.006G263500 [exp] 287 / 1e-92 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021892 [exp] 427 / 3e-147 AT3G23000 427 / 2e-147 SNF1-RELATED PROTEIN KINASE 3.10, CBL-interacting protein kinase 7 (.1) Lus10039404 [exp] 328 / 5e-110 AT3G23000 356 / 2e-121 SNF1-RELATED PROTEIN KINASE 3.10, CBL-interacting protein kinase 7 (.1) Lus10014163 [exp] 307 / 2e-100 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10022749 [exp] 305 / 1e-99 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10042229 [exp] 300 / 8e-98 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10007283 [exp] 297 / 2e-96 AT5G45820 578 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10021852 [exp] 288 / 4e-93 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10036280 [exp] 288 / 5e-93 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10029054 [exp] 285 / 3e-92 AT5G58380 483 / 4e-169 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10034212 [exp] 282 / 4e-91 AT5G45820 473 / 5e-166 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [poplar] [flax] KA1-like PF03822 [poplar] [flax] NAF NAF domain CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.008G160200.1 pacid=42805821 polypeptide=Potri.008G160200.1.p locus=Potri.008G160200 ID=Potri.008G160200.1.v4.1 annot-version=v4.1 ATGGAGCCCCCGCCACCATCAACACTACAAACGACCACCTCGATACCGACCACGCTTCTCAACAAATACGAATTAGGCCGATTACTAGGCCGTGGTAGCT TTGCAAAAGTCTATGCAGCCCGCTCTTTATCCGACAAGACACAGCTGGCAGCGATCAAGATCATAGACAAAACAAAAACCGATGCTGCCATGGAACCTCG TATCATCTCCGAGATTTCAGCCATGCACCGCCTGCAACACCACCCAACCATTCTCAAAATTCACGAAGTTATGGCAACAAAAACCAAAATCTACCTCGTC ATGGAACTTGCCTCAGGAGGTGATCTTTACTCTAAGATCCGCAAGATTGGGAAACTCAAAGAATCAGCCGCACGTCGTTACTTTCAACAACTTGTGTCTG CCCTCCACTTCTGCCACCAAAATGGTGTCTCTCACCGCGATATCAAGCCTCATAATTTACTCCTTGACGGTAAAGGTAATTTAAAAATATCTGATTTTGG ACTCTCGGCTTTGAAGAATGGTGGTGGTGACGGTGTGTTTTTGCTTCAGACTGCTTGTGGGACTCCAGCTTTCACGGCACCGGAAGTTATGTCGCGGCAG GGTTACGACGGAGCTAAAGCGGATGCTTGGTCTTGTGGAGTCATTTTGTTCTTTTTATTGTCGGCTTGTTTGCCATTTGATGACAGTAATCTTGCATTCT TGTATAAGAGAGCTCATAAAGGAGAATATCAAGTGCCCTCTTGTATATCAAAGCCGGTTAAATCGATTATAAACCAGCTTCTAGACCCAAATCCTAATAC AAGAATGAGCATGGAAGCTTTAATGAAGCATTCTTGGTTTTTGAAGAAGTTTGAATTGCCAACTCAAAGTAGTGTGTTCGAGTTGGATTATAAAAAATAT TGTAAATTTGATCAAAAGAGTGCGGTTGCTAGCATTACTGCGTTTGATATAATTTCTCTATCTTCAGGGTTGGATTTGTCACGGTTATTTGAGGTTAAGA ATCGGAAAGAGAGAAGATTTACATCAAGCGATACGGTGGAAAGAGTTACAGAGAGAGTGAGAGAGGTTGGAGGGAGATTGGGGTATAGGGTAGTGGAAGG AAAGGGTGGGAGTGCTATTGGGTTGGGGAAAGGGAGGGTGGGAGTGTTGTTTGAGGTGTTCGAAATAGCGGAGAAGCTGTTGGTGGTGGAAGTTATGGTG GTGGAGGGTGGTGAGGTGGAATTTGAGGAGGTTCATTGGGGAGAACTGAAAGATGAGCTTGAGGACGTTGTGCTTCAATGGCATAATGATGTCATGTGA
AA sequence Show only first row Show all	>Potri.008G160200.1 pacid=42805821 polypeptide=Potri.008G160200.1.p locus=Potri.008G160200 ID=Potri.008G160200.1.v4.1 annot-version=v4.1 MEPPPPSTLQTTTSIPTTLLNKYELGRLLGRGSFAKVYAARSLSDKTQLAAIKIIDKTKTDAAMEPRIISEISAMHRLQHHPTILKIHEVMATKTKIYLV MELASGGDLYSKIRKIGKLKESAARRYFQQLVSALHFCHQNGVSHRDIKPHNLLLDGKGNLKISDFGLSALKNGGGDGVFLLQTACGTPAFTAPEVMSRQ GYDGAKADAWSCGVILFFLLSACLPFDDSNLAFLYKRAHKGEYQVPSCISKPVKSIINQLLDPNPNTRMSMEALMKHSWFLKKFELPTQSSVFELDYKKY CKFDQKSAVASITAFDIISLSSGLDLSRLFEVKNRKERRFTSSDTVERVTERVREVGGRLGYRVVEGKGGSAIGLGKGRVGVLFEVFEIAEKLLVVEVMV VEGGEVEFEEVHWGELKDELEDVVLQWHNDVM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Potri.008G160200 [exp]	0	1	CIPK4.1
					Potri.010G080501 [exp]	1.41	0.8238
AT4G33625			unknown protein		Potri.007G115800 [exp]	1.73	0.8077
AT1G69030			BSD domain-containing protein ...		Potri.008G111900 [exp]	7.61	0.6980
					Potri.001G439825 [exp]	8.12	0.8214
AT1G33270			Acyl transferase/acyl hydrolas...		Potri.003G020800 [exp]	9.79	0.6941
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Potri.005G027600 [exp]	10.77	0.7812	CESA2.3
AT4G24730			Calcineurin-like metallo-phosp...		Potri.012G089300 [exp]	20.49	0.7490	WR3.1
AT1G04570			Major facilitator superfamily ...		Potri.008G173600 [exp]	21.16	0.7507
AT1G64890			Major facilitator superfamily ...		Potri.013G076300 [exp]	22.13	0.6916
AT4G09153		LCR36	low-molecular-weight cysteine-...		Potri.001G401800 [exp]	24.79	0.7359

Compare expression of checked genes

Potri.008G160200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.